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Navigation of microorganisms is controlled by internal processes ultimately sensitive to mechanical or chemical signaling encountered along the path. In many natural environments, such as porous soils or physiological ducts, motile species…

We analyze a minimal model for a rigid spherical microswimmer and explore the consequences of its extended surface on the interplay between its self-propulsion and flow properties. The model is the first order representation of…

软凝聚态物质 · 物理学 2017-12-06 Tapan Chandra Adhyapak , Sara Jabbari-Farouji

Many microorganisms and artificial microswimmers use helical appendages in order to generate locomotion. Though often rotated so as to produce thrust, some species of bacteria such Spiroplasma, Rhodobacter sphaeroides and Spirochetes induce…

生物物理 · 物理学 2018-10-23 Lyndon Koens , Hang Zhang , Martin Moeller , Ahmed Mourran , Eric Lauga

Some types of bacteria use rotating helical flagella to swim. The motion of such organisms takes place in the regime of low Reynolds numbers where viscous effects dominate and where the dynamics is governed by hydrodynamic interactions.…

软凝聚态物质 · 物理学 2007-05-23 M. Reichert , H. Stark

In their search for metabolic resources microbes swim through viscous environments that present physical anisotropies, including steric obstacles across a wide range of sizes. Hydrodynamic forces are known to significantly alter swimmer…

软凝聚态物质 · 物理学 2020-07-03 Kentaro Hoeger , Tristan Ursell

This dissertation presents a method for simulation of motion of the pebbles in a PBR. A new mechanical motion simulator, PEBBLES, efficiently simulates the key elements of motion of the pebbles in a PBR. This model simulates gravitational…

计算物理 · 物理学 2011-04-01 Joshua J. Cogliati

The sedimentation of a rigid particle near a wall in a viscous fluid has been studied numerically by many authors, but analytical solutions have been derived only for special cases such as the motion of spherical particles. In this paper…

流体动力学 · 物理学 2015-05-13 William H. Mitchell , Saverio E. Spagnolie

The mobility of particles in fluid membranes is a fundamental aspect of many biological processes. In a 1975 paper [1], Saffman and Delbr\"uck demonstrated how the presence of external Stokesian solvents is crucial in regularising the…

生物物理 · 物理学 2025-01-10 Marco Vona , Eric Lauga

Viscosity is a key property of cell membranes that controls mobility of embedded proteins and membrane remodeling. Measuring it is challenging because existing approaches involve complex experimental designs and/or models, and the…

软凝聚态物质 · 物理学 2023-07-19 Hammad A. Faizi , Rumiana Dimova , Petia M. Vlahovska

Some prominent discretisation methods such as finite elements provide a way to approximate a function of $d$ variables from $n$ values it takes on the nodes $x_i$ of the corresponding mesh. The accuracy is $n^{-s_a/d}$ in $L^2$-norm, where…

数值分析 · 数学 2024-07-19 Camille Pouchol , Marc Hoffmann

We apply the boundary-element method to Stokes flows with helical symmetry, such as the flow driven by an immersed rotating helical flagellum. We show that the two-dimensional boundary integral method can be reduced to one dimension using…

流体动力学 · 物理学 2013-07-23 Bin Liu , Kenneth S. Breuer , Thomas R. Powers

The flagellated bacterium Escherichia coli is increasingly used experimentally as a self-propelled swimmer. To obtain meaningful, quantitative results that are comparable between different laboratories, reproducible protocols are needed to…

We characterize the bundle properties for three different strains of \textit{B. subtilis} bacteria with various numbers of flagella. Our study reveals that, surprisingly, the number of bundles is independent of the number of flagella, and…

生物物理 · 物理学 2019-12-10 Javad Najafi , Florian Altegoer , Gert Bange , Christian Wagner

It has been considered that the effective bending rigidity of fluid membranes should be reduced by thermal undulations. However, recent thorough investigation by Pinnow and Helfrich revealed significance of measure factors for the partition…

凝聚态物理 · 物理学 2009-11-07 Yoshihiro Nishiyama

Interaction of swimming bacteria with flows controls their ability to explore complex environments, crucial to many societal and environmental challenges and relevant for microfluidic applications as cell sorting. Combining experimental,…

软凝聚态物质 · 物理学 2020-09-03 Guangyin Jing , Andreas Zöttl , Éric Clément , Anke Lindner

Biological membranes are essential for the cell life and hydration water provides the driving force for their assembly and stability. Here we study the structural properties of water in a phospholipid membrane. We characterize local…

软凝聚态物质 · 物理学 2017-03-24 Fausto Martelli , Hsin-Yu Ko , Carles Calero Borallo , Giancarlo Franzese

We analyse a simple 'Stokesian squirmer' model for the enhanced mixing due to swimming micro-organisms. The model is based on a calculation of Thiffeault & Childress [Physics Letters A, 374, 3487 (2010), arXiv:0911.5511], where fluid…

流体动力学 · 物理学 2013-09-24 Zhi Lin , Jean-Luc Thiffeault , Stephen Childress

Cells swimming in confined environments are attracted by surfaces. We measure the steady-state distribution of smooth-swimming bacteria (Escherichia coli) between two glass plates. In agreement with earlier studies, we find a strong…

软凝聚态物质 · 物理学 2008-10-02 Allison P. Berke , Linda Turner , Howard C. Berg , Eric Lauga

The bacterial flagellar motor drives the rotation of flagellar filaments and enables many species of bacteria to swim. Torque is generated by interaction of stator units, anchored to the peptidoglycan cell wall, with the rotor. Recent…

亚细胞过程 · 定量生物学 2010-08-18 G. Meacci , Y. Tu

Peritrichously-flagellated bacteria, such as Escherichia coli, self-propel in fluids by using specialised motors to rotate multiple helical filaments. The rotation of each motor is transmitted to a short flexible segment called the hook…

生物物理 · 物理学 2018-06-07 Emily E. Riley , Debasish Das , Eric Lauga