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Graph is a natural representation of data for a variety of real-word applications, such as knowledge graph mining, social network analysis and biological network comparison. For these applications, graph embedding is crucial as it provides…

机器学习 · 计算机科学 2020-01-24 Bitan Hou , Yujing Wang , Ming Zeng , Shan Jiang , Ole J. Mengshoel , Yunhai Tong , Jing Bai

Generative models of graphs are well-known, but many existing models are limited in scalability and expressivity. We present a novel sequential graphical variational autoencoder operating directly on graphical representations of data. In…

机器学习 · 计算机科学 2019-12-18 Bowen Jing , Ethan A. Chi , Jillian Tang

Learning network representations is a fundamental task for many graph applications such as link prediction, node classification, graph clustering, and graph visualization. Many real-world networks are interpreted as dynamic networks and…

机器学习 · 计算机科学 2019-10-07 Sedigheh Mahdavi , Shima Khoshraftar , Aijun An

In this paper, we benchmark several existing graph neural network (GNN) models on different datasets for link predictions. In particular, the graph convolutional network (GCN), GraphSAGE, graph attention network (GAT) as well as variational…

机器学习 · 计算机科学 2021-02-26 Xing Wang , Alexander Vinel

Invertible transformation of large graphs into fixed dimensional vectors (embeddings) remains a challenge. Its overcoming would reduce any operation on graphs to an operation in a vector space. However, most existing methods are limited to…

机器学习 · 计算机科学 2022-07-12 Adam Małkowski , Jakub Grzechociński , Paweł Wawrzyński

Variational Autoencoders (VAEs) are powerful in data representation inference, but it cannot learn relations between features with its vanilla form and common variations. The ability to capture relations within data can provide the much…

机器学习 · 计算机科学 2020-07-23 Chen Wang , Chengyuan Deng , Vladimir Ivanov

Graph structured data are abundant in the real world. Among different graph types, directed acyclic graphs (DAGs) are of particular interest to machine learning researchers, as many machine learning models are realized as computations on…

机器学习 · 计算机科学 2019-10-30 Muhan Zhang , Shali Jiang , Zhicheng Cui , Roman Garnett , Yixin Chen

Latent representations of drugs and their targets produced by contemporary graph autoencoder-based models have proved useful in predicting many types of node-pair interactions on large networks, including drug-drug, drug-target, and…

生物大分子 · 定量生物学 2022-11-01 Nhat Khang Ngo , Truong Son Hy , Risi Kondor

In this paper, we present a general framework to scale graph autoencoders (AE) and graph variational autoencoders (VAE). This framework leverages graph degeneracy concepts to train models only from a dense subset of nodes instead of using…

机器学习 · 计算机科学 2022-06-22 Guillaume Salha , Romain Hennequin , Viet Anh Tran , Michalis Vazirgiannis

Deep learning on graphs has become a popular research topic with many applications. However, past work has concentrated on learning graph embedding tasks, which is in contrast with advances in generative models for images and text. Is it…

机器学习 · 计算机科学 2018-02-13 Martin Simonovsky , Nikos Komodakis

To address the lack of public power system data for machine learning research in energy networks, we investigate the use of variational graph autoencoders (VGAEs) for synthetic distribution grid generation. Using two open-source datasets,…

机器学习 · 计算机科学 2025-12-02 Syed Zain Abbas , Ehimare Okoyomon

Graph Neural Networks (GNNs) have emerged as the de facto standard for modeling graph data, with attention mechanisms and transformers significantly enhancing their performance on graph-based tasks. Despite these advancements, the…

机器学习 · 计算机科学 2025-04-07 Nikhil Shivakumar Nayak

Adversarial training is an approach for increasing model's resilience against adversarial perturbations. Such approaches have been demonstrated to result in models with feature representations that generalize better. However, limited works…

机器学习 · 计算机科学 2021-08-05 Tianjin Huang , Yulong Pei , Vlado Menkovski , Mykola Pechenizkiy

In the real world, networks often contain multiple relationships among nodes, manifested as the heterogeneity of the edges in the networks. We convert the heterogeneous networks into multiple views by using each view to describe a specific…

社会与信息网络 · 计算机科学 2021-03-15 Lu Wang , Yu Song , Hong Huang , Fanghua Ye , Xuanhua Shi , Hai Jin

Graph Neural Networks (GNNs) and Variational Autoencoders (VAEs) have been widely used in modeling and generating graphs with latent factors. However, there is no clear explanation of what these latent factors are and why they perform well.…

机器学习 · 计算机科学 2020-11-19 Jia Li , Tomasyu Yu , Jiajin Li , Honglei Zhang , Kangfei Zhao , YU Rong , Hong Cheng , Junzhou Huang

Autoencoders are effective deep learning models that can function as generative models and learn latent representations for downstream tasks. The use of graph autoencoders - with both encoder and decoder implemented as message passing…

机器学习 · 计算机科学 2025-03-04 Magnus Cunow , Gerrit Großmann

Link prediction for directed graphs is a crucial task with diverse real-world applications. Recent advances in embedding methods and Graph Neural Networks (GNNs) have shown promising improvements. However, these methods often lack a…

机器学习 · 计算机科学 2025-05-22 Mingguo He , Yuhe Guo , Yanping Zheng , Zhewei Wei , Stephan Günnemann , Xiaokui Xiao

Self-supervised learning with masked autoencoders has recently gained popularity for its ability to produce effective image or textual representations, which can be applied to various downstream tasks without retraining. However, we observe…

机器学习 · 计算机科学 2023-08-21 Yucheng Shi , Yushun Dong , Qiaoyu Tan , Jundong Li , Ninghao Liu

We present RL-VAE, a graph-to-graph variational autoencoder that uses reinforcement learning to decode molecular graphs from latent embeddings. Methods have been described previously for graph-to-graph autoencoding, but these approaches…

机器学习 · 计算机科学 2019-06-06 Steven Kearnes , Li Li , Patrick Riley

This paper looks into the problem of detecting network anomalies by analyzing NetFlow records. While many previous works have used statistical models and machine learning techniques in a supervised way, such solutions have the limitations…

机器学习 · 计算机科学 2019-03-18 Quoc Phong Nguyen , Kar Wai Lim , Dinil Mon Divakaran , Kian Hsiang Low , Mun Choon Chan