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Counting microbial colonies is a fundamental task in microbiology and has many applications in numerous industry branches. Despite this, current studies towards automatic microbial counting using artificial intelligence are hardly…

计算机视觉与模式识别 · 计算机科学 2022-09-07 Sylwia Majchrowska , Jarosław Pawłowski , Natalia Czerep , Aleksander Górecki , Jakub Kuciński , Tomasz Golan

We introduce an effective strategy to generate an annotated synthetic dataset of microbiological images of Petri dishes that can be used to train deep learning models in a fully supervised fashion. The developed generator employs…

计算机视觉与模式识别 · 计算机科学 2022-06-03 Jarosław Pawłowski , Sylwia Majchrowska , Tomasz Golan

We present a computational live bacteria detection system that periodically captures coherent microscopy images of bacterial growth inside a 60 mm diameter agar-plate and analyzes these time-lapsed holograms using deep neural networks for…

Automated recognition and classification of bacteria species from microscopic images have significant importance in clinical microbiology. Bacteria classification is usually carried out manually by biologists using different shapes and…

定量方法 · 定量生物学 2019-12-19 Muhammed Talo

In this paper, a semi-automatic annotation of bacteria genera and species from DIBaS dataset is implemented using clustering and thresholding algorithms. A Deep learning model is trained to achieve the semantic segmentation and…

图像与视频处理 · 电气工程与系统科学 2022-08-24 Chethan Reddy G. P. , Pullagurla Abhijith Reddy , Vidyashree R. Kanabur , Deepu Vijayasenan , Sumam S. David , Sreejith Govindan

Advances in deep learning and transfer learning have paved the way for various automation classification tasks in agriculture, including plant diseases, pests, weeds, and plant species detection. However, agriculture automation still faces…

计算机视觉与模式识别 · 计算机科学 2022-10-07 Zahraa Al Sahili , Mariette Awad

We introduce a labeling tool and dataset aimed to facilitate computer vision research in agriculture. The annotation tool introduces novel methods for labeling with a variety of manual, semi-automatic, and fully-automatic tools. The dataset…

计算机视觉与模式识别 · 计算机科学 2020-04-08 Patrick Wspanialy , Justin Brooks , Medhat Moussa

A deep learning model gives an incredible result for image processing by studying from the trained dataset. Spinach is a leaf vegetable that contains vitamins and nutrients. In our research, a Deep learning method has been used that can…

计算机视觉与模式识别 · 计算机科学 2022-01-07 Mirajul Islam , Nushrat Jahan Ria , Jannatul Ferdous Ani , Abu Kaisar Mohammad Masum , Sheikh Abujar , Syed Akhter Hossain

Uncovering the heterogeneity of cell populations is a long-standing goal in fields ranging from antimicrobial resistance to cancer research. Emerging technology platforms such as droplet microfluidics hold the promise to decipher cellular…

图像与视频处理 · 电气工程与系统科学 2020-01-29 Vasileios Anagnostidis , Benjamin Sherlock , Jeremy Metz , Philip Mair , Florian Hollfelder , Fabrice Gielen

The detection and classification of bacterial colonies in images of agar-plates is important in microbiology, but is hindered by the lack of labeled datasets. Therefore, we propose Colony Grounded SAM2, a zero-shot inference pipeline to…

计算机视觉与模式识别 · 计算机科学 2026-03-17 Daan Korporaal , Patrick de Kruijf , Ralph H. G. M. Litjens , Bas H. M. van der Velden

Biodiversity conservation depends on accurate, up-to-date information about wildlife population distributions. Motion-activated cameras, also known as camera traps, are a critical tool for population surveys, as they are cheap and…

机器学习 · 计算机科学 2019-10-23 Mohammad Sadegh Norouzzadeh , Dan Morris , Sara Beery , Neel Joshi , Nebojsa Jojic , Jeff Clune

The in vitro clonogenic assay is a technique to study the ability of a cell to form a colony in a culture dish. By optical imaging, dishes with stained colonies can be scanned and assessed digitally. Identification, segmentation and…

计算机视觉与模式识别 · 计算机科学 2022-02-15 Delmon Arous , Stefan Schrunner , Ingunn Hanson , Nina F. J. Edin , Eirik Malinen

Quality assessment of agricultural produce is a crucial step in minimizing food stock wastage. However, this is currently done manually and often requires expert supervision, especially in smaller seeds like corn. We propose a novel…

计算机视觉与模式识别 · 计算机科学 2021-10-05 Sandeep Nagar , Prateek Pani , Raj Nair , Girish Varma

We introduce DatasetGAN: an automatic procedure to generate massive datasets of high-quality semantically segmented images requiring minimal human effort. Current deep networks are extremely data-hungry, benefiting from training on…

计算机视觉与模式识别 · 计算机科学 2021-04-21 Yuxuan Zhang , Huan Ling , Jun Gao , Kangxue Yin , Jean-Francois Lafleche , Adela Barriuso , Antonio Torralba , Sanja Fidler

Deep learning has dramatically improved the performance in many application areas such as image classification, object detection, speech recognition, drug discovery and etc since 2012. Where deep learning algorithms promise to discover the…

图像与视频处理 · 电气工程与系统科学 2020-03-25 X. F. Xu , S. Talbot , T. Selvaraja

Real-world applications of computer vision in the humanities require algorithms to be robust against artistic abstraction, peripheral objects, and subtle differences between fine-grained target classes. Existing datasets provide…

计算机视觉与模式识别 · 计算机科学 2025-07-14 Mathias Zinnen , Prathmesh Madhu , Inger Leemans , Peter Bell , Azhar Hussian , Hang Tran , Ali Hürriyetoğlu , Andreas Maier , Vincent Christlein

Underwater surveys conducted using divers or robots equipped with customized camera payloads can generate a large number of images. Manual review of these images to extract ecological data is prohibitive in terms of time and cost, thus…

计算机视觉与模式识别 · 计算机科学 2020-09-22 Scarlett Raine , Ross Marchant , Peyman Moghadam , Frederic Maire , Brett Kettle , Brano Kusy

Aphid infestation poses a significant threat to crop production, rural communities, and global food security. While chemical pest control is crucial for maximizing yields, applying chemicals across entire fields is both environmentally…

计算机视觉与模式识别 · 计算机科学 2023-08-14 Tianxiao Zhang , Kaidong Li , Xiangyu Chen , Cuncong Zhong , Bo Luo , Ivan Grijalva , Brian McCornack , Daniel Flippo , Ajay Sharda , Guanghui Wang

CNN visualization and interpretation methods, like class-activation maps (CAMs), are typically used to highlight the image regions linked to class predictions. These models allow to simultaneously classify images and extract class-dependent…

计算机视觉与模式识别 · 计算机科学 2020-11-17 Soufiane Belharbi , Ismail Ben Ayed , Luke McCaffrey , Eric Granger

With the increasing performance of machine learning techniques in the last few years, the computer vision and robotics communities have created a large number of datasets for benchmarking object recognition tasks. These datasets cover a…

计算机视觉与模式识别 · 计算机科学 2016-11-18 Philipp Jund , Nichola Abdo , Andreas Eitel , Wolfram Burgard
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