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MicroRNAs (miRNAs) are short sequences of ribonucleic acids that control the expression of target messenger RNAs (mRNAs) by binding them. Robust prediction of miRNA-mRNA pairs is of utmost importance in deciphering gene regulations but has…

机器学习 · 计算机科学 2016-09-27 Byunghan Lee , Junghwan Baek , Seunghyun Park , Sungroh Yoon

MicroRNAs (miRNAs) are small non-coding RNAs that control gene expression at the post-transcriptional level through complementary base pairing with the target mRNA, leading to mRNA degradation and blocking translation process. Any…

基因组学 · 定量生物学 2020-05-01 Muniba Faiza , Khushnuma Tanveer , Saman Fatihi , Yonghua Wang , Khalid Raza

Since microRNAs (miRNAs) play a crucial role in post-transcriptional gene regulation, miRNA identification is one of the most essential problems in computational biology. miRNAs are usually short in length ranging between 20 and 23 base…

机器学习 · 计算机科学 2016-05-04 Seunghyun Park , Seonwoo Min , Hyunsoo Choi , Sungroh Yoon

MicroRNAs (miRNAs) are a class of small noncoding RNAs that can regulate many genes by base pairing to sites in mRNAs. The functionality of miRNAs overlaps that of short interfering RNAs (siRNAs), and many features of miRNA targeting have…

基因组学 · 定量生物学 2021-07-08 Takaya Saito , Pål Sætrom

MicroRNAs (miRNAs) are endogenous small non-coding RNAs that play an important role in post-transcriptional gene regulation. However, the experimental determination of miRNA sequence and structure is both expensive and time-consuming.…

基因组学 · 定量生物学 2021-06-30 Shyaman Jayasundara , Sandali Lokuge , Puwasuru Ihalagedara , Damayanthi Herath

MicroRNA (miRNA) are small non-coding RNAs that regulates the gene expression at the post-transcriptional level. Determining whether a sequence segment is miRNA is experimentally challenging. Also, experimental results are sensitive to the…

定量方法 · 定量生物学 2017-04-13 Jaya Thomas , Lee Sael

Multi-target tracking (MTT) is a classical signal processing task, where the goal is to estimate the states of an unknown number of moving targets from noisy sensor measurements. In this paper, we revisit MTT from a deep learning…

信号处理 · 电气工程与系统科学 2024-05-15 Damian Owerko , Charilaos I. Kanatsoulis , Jennifer Bondarchuk , Donald J. Bucci , Alejandro Ribeiro

It has been estimated that about 30% of the genes in the human genome are regulated by microRNAs (miRNAs). These are short RNA sequences that can down-regulate the levels of mRNAs or proteins in animals and plants. Genes regulated by miRNAs…

Click-through rate (CTR) prediction tasks play a pivotal role in real-world applications, particularly in recommendation systems and online advertising. A significant research branch in this domain focuses on user behavior modeling. Current…

信息检索 · 计算机科学 2024-04-18 Hengyu Zhang , Junwei Pan , Dapeng Liu , Jie Jiang , Xiu Li

Activity cliff prediction is a critical task in drug discovery and material design. Existing computational methods are limited to handling single binding targets, which restricts the applicability of these prediction models. In this paper,…

机器学习 · 计算机科学 2025-06-09 Zishan Shu , Yufan Deng , Hongyu Zhang , Zhiwei Nie , Jie Chen

Click-Through Rate (CTR) prediction is a core task in nowadays commercial recommender systems. Feature crossing, as the mainline of research on CTR prediction, has shown a promising way to enhance predictive performance. Even though various…

信息检索 · 计算机科学 2021-04-23 Runlong Yu , Yuyang Ye , Qi Liu , Zihan Wang , Chunfeng Yang , Yucheng Hu , Enhong Chen

Most uses of machine learning today involve training a model from scratch for a particular task, or sometimes starting with a model pretrained on a related task and then fine-tuning on a downstream task. Both approaches offer limited…

机器学习 · 计算机科学 2022-05-26 Andrea Gesmundo , Jeff Dean

MicroRNAs (miRs) are robust regulators of gene expression, implicated in most biological processes. microRNAs predominantly downregulate the expression of genes post-transcriptionally and each miR is predicted to target several hundred…

We developed an online database, ExprTargetDB, of human miRNA targets predicted by an approach that integrates gene expression profiling into a broader framework involving important features of miRNA target site predictions.

定量方法 · 定量生物学 2013-08-09 Eric R. Gamazon , Hae-Kyung Im , Shiwei Duan , Yves A. Lussier , Nancy J. Cox , M. Eileen Dolan , Wei Zhang

Advertising and feed ranking are essential to many Internet companies such as Facebook. Among many real-world advertising and feed ranking systems, click through rate (CTR) prediction plays a central role. In recent years, many neural…

机器学习 · 计算机科学 2020-07-08 Tongwen Huang , Qingyun She , Zhiqiang Wang , Junlin Zhang

Over the past few years, microRNAs (miRNAs) have emerged as a new prominent class of gene regulatory factors that negatively regulate expression of approximately one-third of the genes in animal genomes at post-transcriptional level.…

基因组学 · 定量生物学 2007-05-23 Qinghua Cui , Zhenbao Yu , Youlian Pan , Enrico Purisima , Edwin Wang

Click-through rate (CTR) estimation is a fundamental task in personalized advertising and recommender systems and it's important for ranking models to effectively capture complex high-order features.Inspired by the success of ELMO and Bert…

信息检索 · 计算机科学 2021-07-27 Zhiqiang Wang , Qingyun She , PengTao Zhang , Junlin Zhang

The CTR (Click-Through Rate) prediction plays a central role in the domain of computational advertising and recommender systems. There exists several kinds of methods proposed in this field, such as Logistic Regression (LR), Factorization…

信息检索 · 计算机科学 2020-06-30 Shu Wu , Feng Yu , Xueli Yu , Qiang Liu , Liang Wang , Tieniu Tan , Jie Shao , Fan Huang

Almost all the state-of-the-art neural networks for computer vision tasks are trained by (1) pre-training on a large-scale dataset and (2) finetuning on the target dataset. This strategy helps reduce dependence on the target dataset and…

计算机视觉与模式识别 · 计算机科学 2021-11-22 Shuvam Chakraborty , Burak Uzkent , Kumar Ayush , Kumar Tanmay , Evan Sheehan , Stefano Ermon

The Human Genome Project has led to an exponential increase in data related to the sequence, structure, and function of biomolecules. Bioinformatics is an interdisciplinary research field that primarily uses computational methods to analyze…

生物大分子 · 定量生物学 2024-05-14 Yanlin Zhou , Tong Zhan , Yichao Wu , Bo Song , Chenxi Shi
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