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Flux analysis is a class of constraint-based approaches to the study of biochemical reaction networks: they are based on determining the reaction flux configurations compatible with given stoichiometric and thermodynamic constraints. One of…

分子网络 · 定量生物学 2015-05-18 A. De Martino , E. Marinari

Diverse biological networks exhibit universal features distinguished from those of random networks, calling much attention to their origins and implications. Here we propose a minimal evolution model of Boolean regulatory networks, which…

分子网络 · 定量生物学 2014-11-26 Deok-Sun Lee

In this paper, we consider the problem of exploring structural regularities of networks by dividing the nodes of a network into groups such that the members of each group have similar patterns of connections to other groups. Specifically,…

物理与社会 · 物理学 2015-05-30 Hua-Wei Shen , Xue-Qi Cheng , Jia-Feng Guo

Fluctuations play a central role in many fields of physics, from quantum electrodynamics to statistical mechanics. In active matter physics, most models focus on thermal fluctuations due to a surrounding solvent. An alternative but much…

软凝聚态物质 · 物理学 2025-04-17 Sebastian Fehlinger , Kai Cui , Arooj Sajjad , Heinz Koeppl , Benno Liebchen

The networks of predator-prey interactions in ecological systems are remarkably complex, but nevertheless surprisingly stable in terms of long term persistence of the system as a whole. In order to understand the mechanism driving the…

种群与进化 · 定量生物学 2015-06-05 Korinna T. Allhoff , Daniel Ritterskamp , Björn C. Rall , Barbara Drossel , Christian Guill

Quantitative population modelling is an invaluable tool for identifying the cascading effects of ecosystem management and interventions. Ecosystem models are often constructed by assuming stability and coexistence in ecological communities…

种群与进化 · 定量生物学 2024-09-06 Sarah A. Vollert , Christopher Drovandi , Matthew P. Adams

We present new theoretical and empirical results on the probability distributions of species persistence times in natural ecosystems. Persistence times, defined as the timespans occurring between species' colonization and local extinction…

种群与进化 · 定量生物学 2012-03-21 S. Suweis , E. Bertuzzo , L. Mari , I. Rodriguez-Iturbe , A. Maritan , A. Rinaldo

Large-scale white matter pathways crisscrossing the cortex create a complex pattern of connectivity that underlies human cognitive function. Generative mechanisms for this architecture have been difficult to identify in part because little…

神经元与认知 · 定量生物学 2015-06-16 Florian Klimm , Danielle S. Bassett , Jean M. Carlson , Peter J. Mucha

The increasing availability of time --and space-- resolved data describing human activities and interactions gives insights into both static and dynamic properties of human behavior. In practice, nevertheless, real-world datasets can often…

We propose a generic system model for a special category of interdependent networks, demand-supply networks, in which the demand and the supply nodes are associated with heterogeneous loads and resources, respectively. Our model sheds a…

网络与互联网体系结构 · 计算机科学 2019-11-11 Seyyedali Hosseinalipour , Jiayu Mao , Do Young Eun , Huaiyu Dai

Latent variable models for network data extract a summary of the relational structure underlying an observed network. The simplest possible models subdivide nodes of the network into clusters; the probability of a link between any two nodes…

机器学习 · 计算机科学 2012-07-03 Konstantina Palla , David Knowles , Zoubin Ghahramani

We review the recent fast progress in statistical physics of evolving networks. Interest has focused mainly on the structural properties of random complex networks in communications, biology, social sciences and economics. A number of giant…

统计力学 · 物理学 2015-06-24 S. N. Dorogovtsev , J. F. F. Mendes

Over the last two decades, network theory has shown to be a fruitful paradigm in understanding the organization and functioning of real-world complex systems. One technique helpful to this endeavor is identifying functionally influential…

物理与社会 · 物理学 2022-01-24 Francesco Picciolo , Franco Ruzzenenti , Petter Holme , Rossana Mastrandrea

Nonequilibrium complex systems are often effectively described by the mixture of different dynamics on different time scales. Superstatistics, which is "statistics of statistics" with two largely separated time scales, offers a consistent…

统计力学 · 物理学 2015-05-18 Sumiyoshi Abe

We found that models of evolving random networks exhibit dynamic scaling similar to scaling of growing surfaces. It is demonstrated by numerical simulations of two variants of the model in which nodes are added as well as removed [Phys.…

统计力学 · 物理学 2009-11-07 Miroslav Kotrla , Frantisek Slanina , Jakub Steiner

The behaviour and functioning of a variety of complex physical and biological systems depend on the spatial organisation of their constituent units, and on the presence and formation of clusters of functionally similar or related…

物理与社会 · 物理学 2023-08-16 Silvia Rognone , Vincenzo Nicosia

Ecosystems are formed by networks of species and their interactions. Traditional models of such interactions assume a constant interaction strength between a given pair of species. However, there is often significant trait variation among…

种群与进化 · 定量生物学 2022-05-03 Zachary Jackson , BingKan Xue

One of the main challenges in the study of time-varying networks is the interplay of memory effects with structural heterogeneity. In particular, different nodes and dyads can have very different statistical properties in terms of both link…

物理与社会 · 物理学 2026-04-20 Giulio Virginio Clemente , Claudio J. Tessone , Diego Garlaschelli

Precipitation is one of the most important meteorological variables for defining the climate dynamics, but the spatial patterns of precipitation have not been fully investigated yet. The complex network theory, which provides a robust tool…

大气与海洋物理 · 物理学 2013-08-22 Stefania Scarsoglio , Francesco Laio , Luca Ridolfi

The statistical properties of an ecosystem composed of species interacting via pairwise, random interactions and deterministic, concentration limiting self-interaction are studied analytically with tools of equilibrium statistical mechanics…

无序系统与神经网络 · 物理学 2009-11-07 Viviane M. de Oliveira , J. F. Fontanari
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