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Here we report on the translocation of folded polymers through nano-pores using molecular dynamic simulations. Two cases are studied; one in which a folded molecule unfolds upon passage and one in which the folding remains intact as the…

软凝聚态物质 · 物理学 2016-03-23 Narges Nikoofard , Alireza Mashaghi

The transport of polymers with folded configurations across membrane pores is investigated theoretically by analyzing simple discrete stochastic models. The translocation dynamics is viewed as a sequence of two events: motion of the folded…

统计力学 · 物理学 2009-11-13 Stanislav Kotsev , Anatoly B. Kolomeisky

We investigate the dynamics of nanoparticles in semidilute polymer solutions when the nanoparticles are comparably sized to the polymer coils using explicit- and implicit-solvent simulation methods. The nanoparticle dynamics are…

Motivated by chromosomes enclosed in nucleus and the recently discovered active topological glass, we study a spherically confined melt of long nonconcatenated active polymer rings. Without activity, the rings exhibit the same average…

软凝聚态物质 · 物理学 2021-07-27 Iurii Chubak , Stanard Mebwe Pachong , Kurt Kremer , Christos N. Likos , Jan Smrek

The presence of nanoparticles in a diblock copolymer leads to changes in the morphology and properties of the matrix and can produce highly organized hybrid materials. The resulting material properties depend not only on the polymer…

软凝聚态物质 · 物理学 2018-05-30 Javier Diaz , Marco Pinna , Andrei Zvelindovsky , Adelchi Asta , Ignacio Pagonabarraga

We present a novel mechanism for resolving the mechanical rigidity of nanoscopic circular polymers that flow in a complex environment. The emergence of a regime of negative differential mobility induced by topological interactions between…

软凝聚态物质 · 物理学 2018-11-21 Stefano Iubini , Enzo Orlandini , Davide Michieletto , Marco Baiesi

Recent theoretical studies found that mixtures of active and passive colloidal particles phase separate but only at very high activity ratio. The high value poses serious obstacles for experimental exploration of this phenomenon. Here we…

软凝聚态物质 · 物理学 2017-03-08 Jan Smrek , Kurt Kremer

Mixtures of active and passive particles are ubiquitous at the microscale. Many essential microbial processes involve interactions with dead or immotile cells or passive crowders. When passive objects are immersed in active baths, their…

软凝聚态物质 · 物理学 2026-02-24 Horacio Serna , C. Miguel Barriuso G. , Ignacio Pagonabarraga , Marco Polin , Chantal Valeriani

In the presented work we study, by means of numerical simulations, the behaviour of a suspension of active ring polymers in the bulk and under lateral confinement. When changing the separation between the confining planes and the polymers'…

软凝聚态物质 · 物理学 2023-07-31 Juan Pablo Miranda-López , Emanuele Locatelli , Chantal Valeriani

Entangled networks of stiff biopolymers exhibit complex dynamic response, emerging from the topological constraints that neighboring filaments impose upon each other. We propose a class of reference models for entanglement dynamics of stiff…

软凝聚态物质 · 物理学 2008-06-23 Felix Höfling , Tobias Munk , Erwin Frey , Thomas Franosch

In this paper, we employ Molecular Dynamics computer simulations to study and compare the statics and dynamics of linear and circular (ring) polymer chains in entangled solutions of different densities. While we confirm that linear chain…

软凝聚态物质 · 物理学 2016-02-17 Negar Nahali , Angelo Rosa

Dielectrophoresis (DEP), the motion of polarizable particles in non-uniform electric fields, has become an important tool for the transport, separation, and characterization of microparticles in biomedical and nanoelectronics research. In…

软凝聚态物质 · 物理学 2009-11-11 E. Salonen , E. Terama , I. Vattulainen , M. Karttunen

Nanocomposite materials made of block copolymer and nanoparticles display properties which can be different from the purely polymeric matrix. The resulting material is a crossover of the original properties of the block copolymer and the…

软凝聚态物质 · 物理学 2019-11-04 Javier Diaz , Marco Pinna , Andrei V. Zvelindovsky , Ignacio Pagonabarraga

Inspired by recent experiments on chromosomal dynamics, we introduce an exactly solvable model for the interaction between a flexible polymer and a set of motor-like enzymes. The enzymes can bind and unbind to specific sites of the polymer…

软凝聚态物质 · 物理学 2019-04-03 Stefanie Put , Takahiro Sakaue , Carlo Vanderzande

Physically confining polymers into nanoscale pores induces significant changes in their dynamics. Although different results on the effect of confinement on the dynamics of polymers have been reported, changes in the segmental mobility of…

软凝聚态物质 · 物理学 2022-05-27 R. Bharath Venkatesh , Daeyeon Lee

We study ground states of a hybrid system consisting of a polymer and an attractive nanowire by means of computer simulations. Depending on structural and energetic properties of the substrate, we find different adsorbed polymer…

软凝聚态物质 · 物理学 2011-03-10 Thomas Vogel , Michael Bachmann

Blends of polymers of different topologies, such as ring and supercoiled, naturally occur in biology and often exhibit emergent viscoelastic properties coveted in industry. However, due to their complexity, along with the difficulty of…

We investigate the wrapping conformations of a strongly adsorbed polymer chain on an oppositely charged nano-sphere by employing a reduced (dimensionless) representation of a primitive chain-sphere model. This enables us to determine the…

软凝聚态物质 · 物理学 2014-07-07 Hoda Boroudjerdi , Ali Naji , Roland R. Netz

Theory is presented for the phase stability of mixtures containing nanospheres and non-adsorbing reversible supramolecular polymers. This was made possible by incorporating the depletion thickness and osmotic pressure of reversible…

软凝聚态物质 · 物理学 2011-06-09 Remco Tuinier

Using computer simulations in two dimensions we investigate the dynamics and structure of passive polymeric tracer with different topologies immersed in a low-density active particle bath. One of the key observations is that polymer exhibit…

软凝聚态物质 · 物理学 2025-10-14 Ramanand Singh Yadav , Ralf Metzler , Rajarshi Chakrabarti
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