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Increased availability of epidemiological data, novel digital data streams, and the rise of powerful machine learning approaches have generated a surge of research activity on real-time epidemic forecast systems. In this paper, we propose…

Distributional forecasts are important for a wide variety of applications, including forecasting epidemics. Often, forecasts are miscalibrated, or unreliable in assigning uncertainty to future events. We present a recalibration method that…

机器学习 · 计算机科学 2023-01-11 Aaron Rumack , Ryan J. Tibshirani , Roni Rosenfeld

Epidemics of influenza are major public health concerns. Since influenza prediction always relies on the weekly clinical or laboratory surveillance data, typically the weekly Influenza-like illness (ILI) rate series, accurate…

机器学习 · 计算机科学 2021-10-28 Siyue Yang , Yukun Bao

Influenza is an infectious disease with the potential to become a pandemic, and hence, forecasting its prevalence is an important undertaking for planning an effective response. Research has found that web search activity can be used to…

机器学习 · 计算机科学 2021-05-27 Michael Morris , Peter Hayes , Ingemar J. Cox , Vasileios Lampos

Bayesian inference methods are useful in infectious diseases modeling due to their capability to propagate uncertainty, manage sparse data, incorporate latent structures, and address high-dimensional parameter spaces. However, parameter…

统计方法学 · 统计学 2025-04-29 Xiahui Li , Fergus Chadwick , Ben Swallow

Public health surveillance systems often fail to detect emerging infectious diseases, particularly in resource limited settings. By integrating relevant clinical and internet-source data, we can close critical gaps in coverage and…

应用统计 · 统计学 2019-03-05 Kai Liu , Ravi Srinivasan , Lauren Ancel Meyers

Seasonal influenza causes on average 425,000 hospitalizations and 32,000 deaths per year in the United States. Forecasts of influenza-like illness (ILI) -- a surrogate for the proportion of patients infected with influenza -- support public…

应用统计 · 统计学 2024-01-02 Ningxi Wei , Xinze Zhou , Wei-Min Huang , Thomas McAndrew

In this manuscript, we use meteorological information in Galicia (Spain) to propose a novel approach to predict the incidence of influenza. Our approach extends the GLS methods in the multivariate framework to functional regression models…

Throughout the Covid-19 pandemic, a significant amount of effort had been put into developing techniques that predict the number of infections under various assumptions about the public policy and non-pharmaceutical interventions. While…

计算机与社会 · 计算机科学 2021-12-22 Sharare Zehtabian , Siavash Khodadadeh , Damla Turgut , Ladislau Bölöni

Seasonal influenza is a sometimes surprisingly impactful disease, causing thousands of deaths per year along with much additional morbidity. Timely knowledge of the outbreak state is valuable for managing an effective response. The current…

种群与进化 · 定量生物学 2020-07-01 Reid Priedhorsky , Ashlynn R. Daughton , Martha Barnard , Fiona O'Connell , Dave Osthus

Influenza epidemics result in a public health and economic burden around the globe. Traditional surveillance techniques, which rely on doctor visits, provide data with a delay of 1-2 weeks. A means of obtaining real-time data and…

种群与进化 · 定量生物学 2019-04-11 Wendy K. Caldwell , Geoffrey Fairchild , Sara Y. Del Valle

Early prediction of the prevalence of influenza reduces its impact. Various studies have been conducted to predict the number of influenza-infected people. However, these studies are not highly accurate especially in the distant future such…

机器学习 · 计算机科学 2019-07-08 Kenjiro Kondo , Akihiko Ishikawa , Masashi Kimura

Pandemic influenza has the epidemic potential to kill millions of people. While various preventive measures exist (i.a., vaccination and school closures), deciding on strategies that lead to their most effective and efficient use remains…

Modern epidemiological analytics increasingly use machine learning models that offer strong prediction but often lack calibrated uncertainty. Bayesian methods provide principled uncertainty quantification, yet are viewed as difficult to…

机器学习 · 统计学 2025-11-18 Debashis Chatterjee

Artificial Intelligence (AI) and infectious diseases prediction have recently experienced a common development and advancement. Machine learning (ML) apparition, along with deep learning (DL) emergence, extended many approaches against…

机器学习 · 计算机科学 2025-01-29 Selestine Melchane , Youssef Elmir , Farid Kacimi , Larbi Boubchir

Population heterogeneity is a key factor in epidemic dynamics, influencing both transmission and final epidemic size. While heterogeneity is often modelled through age structure, spatial location, or contact patterns, differences in host…

种群与进化 · 定量生物学 2026-01-26 Tamás Tekeli , Andrea Pugliese , Cinzia Soresina

This paper proposes a sequential ensemble methodology for epidemic modeling that integrates discrete-time Hawkes processes (DTHP) and Susceptible-Exposed-Infectious-Removed (SEIR) models. Motivated by the need for accurate and reliable…

应用统计 · 统计学 2026-01-21 Dhorasso Temfack , Jason Wyse

Self-supervision may boost model performance in downstream tasks. However, there is no principled way of selecting the self-supervised objectives that yield the most adaptable models. Here, we study this problem on daily time-series data…

机器学习 · 计算机科学 2021-12-28 Arinbjörn Kolbeinsson , Piyusha Gade , Raghu Kainkaryam , Filip Jankovic , Luca Foschini

The COVID-19 pandemic has brought forth the importance of epidemic forecasting for decision makers in multiple domains, ranging from public health to the economy as a whole. While forecasting epidemic progression is frequently…

Forecasting the short-term spread of an ongoing disease outbreak is a formidable challenge due to the complexity of contributing factors, some of which can be characterized through interlinked, multi-modality variables such as…

机器学习 · 计算机科学 2024-04-11 Hongru Du , Jianan Zhao , Yang Zhao , Shaochong Xu , Xihong Lin , Yiran Chen , Lauren M. Gardner , Hao Frank Yang