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Contact tracing is one of the most important tools for preventing the spread of infectious diseases, but as the experience of COVID-19 showed, it is also next-to-impossible to implement when the disease is spreading rapidly. We show how to…

统计方法学 · 统计学 2023-12-12 Aparajithan Venkateswaran , Jishnu Das , Tyler H. McCormick

Aim of this paper is the description of a new tool to support institutions in the implementation of targeted countermeasures, based on quantitative and multi-scale elements, for the fight and prevention of emergencies, such as the current…

计算机与社会 · 计算机科学 2020-11-12 A. Sebastianelli , F. Mauro , G. Di Cosmo , F. Passarini , M. Carminati , S. L. Ullo

Having accurate and timely data on confirmed active COVID-19 cases is challenging, since it depends on testing capacity and the availability of an appropriate infrastructure to perform tests and aggregate their results. In this paper, we…

The changing nature of the COVID-19 pandemic has highlighted the importance of comprehensively considering its impacts and considering changes over time. Most COVID-19 related research addresses narrowly focused research questions and is…

The spread of an undesirable contact process, such as an infectious disease (e.g. COVID-19), is contained through testing and isolation of infected nodes. The temporal and spatial evolution of the process (along with containment through…

机器学习 · 计算机科学 2023-03-24 Xingran Chen , Hesam Nikpey , Jungyeol Kim , Saswati Sarkar , Shirin Saeedi-Bidokhti

The COVID-19 pandemic has spread rapidly worldwide, overwhelming manual contact tracing in many countries and resulting in widespread lockdowns for emergency containment. Large-scale digital contact tracing (DCT) has emerged as a potential…

One of the more widely advocated solutions for slowing down the spread of COVID-19 has been automated contact tracing. Since proximity data can be collected by personal mobile devices, the natural proposal has been to use this for automated…

种群与进化 · 定量生物学 2023-10-09 Hyunju Kim , Ayan Paul

The coronavirus disease 2019 (COVID-19) pandemic has spread rapidly across the world, leading to enormous amounts of human death and economic loss. Until definitive preventive or curative measures are developed, policies regarding testing,…

Strategic test allocation plays a major role in the control of both emerging and existing pandemics (e.g., COVID-19, HIV). Widespread testing supports effective epidemic control by (1) reducing transmission via identifying cases, and (2)…

统计方法学 · 统计学 2022-12-06 Ivana Malenica , Jeremy R. Coyle , Mark J. van der Laan , Maya L. Petersen

The emergence of an epidemic evokes the need to monitor its spread and assess and validate any mitigation measures enacted by governments and administrative bodies in real time. We present here a method to observe and quantify this spread…

种群与进化 · 定量生物学 2024-11-06 Justin Trujillo , Valerica Raicu

We propose a mathematical model based on probability theory to optimize COVID-19 testing by a multi-step batch testing approach with variable batch sizes. This model and simulation tool dramatically increase the efficiency and efficacy of…

统计方法学 · 统计学 2021-01-11 Hongshik Ahn , Haoran Jiang , Xiaolin Li

COVID-19, a viral respiratory pandemic, has rapidly spread throughout the globe. Large scale and rapid testing of the population is required to contain the disease, but such testing is prohibitive in terms of resources, cost and time.…

种群与进化 · 定量生物学 2020-07-21 Abhishek Srivastava , Anurag Mishra , Trusha Jayant Parekh , Sampreeti Jena

Coronavirus disease 2019 (COVID-19) is an ongoing pandemic infectious disease outbreak that has significantly harmed and threatened the health and lives of millions or even billions of people. COVID-19 has also negatively impacted the…

定量方法 · 定量生物学 2020-04-14 Jirong Yi , Raghu Mudumbai , Weiyu Xu

Because of the rapid spread of COVID-19 to almost every part of the globe, huge volumes of data and case studies have been made available, providing researchers with a unique opportunity to find trends and make discoveries like never…

机器学习 · 计算机科学 2021-10-20 Sarwan Ali , Yijing Zhou , Murray Patterson

Group testing is an efficient method for testing a large population to detect infected individuals. In this paper, we consider an efficient adaptive two stage group testing scheme. Using a straightforward analysis, we characterize the…

统计方法学 · 统计学 2020-08-26 Arjun Kodialam

The emergence of coronavirus disease 2019 (COVID-19) in the United States has forced federal and local governments to implement containment measures. Moreover, the severity of the situation has sparked engagement by both the research and…

种群与进化 · 定量生物学 2020-07-03 Min Lu , Hemant Ishwaran

Sample pooling consists in combining samples from multiple individuals into a single pool that is then tested using a unique test-kit. A positive test means that at least one individual within the pool is infected. Here, we propose an…

定量方法 · 定量生物学 2021-03-18 Vincent Brault , Bastien Mallein , Jean-Francois Rupprecht

In many public health settings, there is a perceived tension between allocating resources to known vulnerable areas and learning about the overall prevalence of the problem. Inspired by a door-to-door Covid-19 testing program we helped…

机器学习 · 计算机科学 2021-10-27 Ben Chugg , Daniel E. Ho

With the outbreak of COVID-19 pandemic, a dire need to effectively identify the individuals who may have come in close-contact to others who have been infected with COVID-19 has risen. This process of identifying individuals, also termed as…

Modeling infection spread during pandemics is not new, with models using past data to tune simulation parameters for predictions. These help understand the healthcare burden posed by a pandemic and respond accordingly. However, the problem…

系统与控制 · 电气工程与系统科学 2020-10-21 Himanshu Kharkwal , Dakota Olson , Jiali Huang , Abhiraj Mohan , Ankur Mani , Jaideep Srivastava