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We propose a simple auto-encoder framework for molecule generation. The molecular graph is first encoded into a continuous latent representation $z$, which is then decoded back to a molecule. The encoding process is easy, but the decoding…

机器学习 · 计算机科学 2019-06-18 Xavier Bresson , Thomas Laurent

Publicly available, large pretrained LanguageModels (LMs) generate text with remarkable quality, but only sequentially from left to right. As a result, they are not immediately applicable to generation tasks that break the unidirectional…

计算与语言 · 计算机科学 2021-12-28 Peter West , Ximing Lu , Ari Holtzman , Chandra Bhagavatula , Jena Hwang , Yejin Choi

We study lossless acceleration for seq2seq generation with a novel decoding algorithm -- Aggressive Decoding. Unlike the previous efforts (e.g., non-autoregressive decoding) speeding up seq2seq generation at the cost of quality loss, our…

计算与语言 · 计算机科学 2022-05-23 Tao Ge , Heming Xia , Xin Sun , Si-Qing Chen , Furu Wei

Current auto-regressive models can generate high-quality, topologically precise meshes; however, they necessitate thousands-or even tens of thousands-of next-token predictions during inference, resulting in substantial latency. We introduce…

图形学 · 计算机科学 2025-08-07 Dian Chen , Yansong Qu , Xinyang Li , Ming Li , Shengchuan Zhang

The personalized bundle generation problem, which aims to create a preferred bundle for user from numerous candidate items, receives increasing attention in recommendation. However, existing works ignore the order-invariant nature of the…

机器学习 · 计算机科学 2024-11-01 Wenchuan Yang , Cheng Yang , Jichao Li , Yuejin Tan , Xin Lu , Chuan Shi

Non-autoregressive generation (NAG) has recently attracted great attention due to its fast inference speed. However, the generation quality of existing NAG models still lags behind their autoregressive counterparts. In this work, we show…

计算与语言 · 计算机科学 2021-02-17 Yixuan Su , Deng Cai , Yan Wang , David Vandyke , Simon Baker , Piji Li , Nigel Collier

Recent advances in artificial intelligence have propelled the development of innovative computational materials modeling and design techniques. Generative deep learning models have been used for molecular representation, discovery, and…

化学物理 · 物理学 2021-02-12 Navid Shervani-Tabar , Nicholas Zabaras

Flow-based generative models are a family of exact log-likelihood models with tractable sampling and latent-variable inference, hence conceptually attractive for modeling complex distributions. However, flow-based models are limited by…

机器学习 · 计算机科学 2019-05-09 Huadong Liao , Jiawei He , Kunxian Shu

Open-ended text generation with autoregressive language models (LMs) is one of the core tasks in natural language processing. However, maximization-based decoding methods (e.g., greedy/beam search) often lead to the degeneration problem,…

计算与语言 · 计算机科学 2022-12-06 Tian Lan , Yixuan Su , Shuhang Liu , Heyan Huang , Xian-Ling Mao

In standard autoregressive generation, an LLM predicts the next-token distribution, samples a discrete token, and then discards the distribution, passing only the sampled token as new input. To preserve this distribution's rich information,…

计算与语言 · 计算机科学 2025-10-24 Yufan Zhuang , Liyuan Liu , Chandan Singh , Jingbo Shang , Jianfeng Gao

Retrosynthesis prediction focuses on identifying reactants capable of synthesizing a target product. Typically, the retrosynthesis prediction involves two phases: Reaction Center Identification and Reactant Generation. However, we argue…

人工智能 · 计算机科学 2025-01-15 Shengyin Sun , Wenhao Yu , Yuxiang Ren , Weitao Du , Liwei Liu , Xuecang Zhang , Ying Hu , Chen Ma

Discrete diffusion models have recently become competitive with autoregressive models for language modeling, even outperforming them on reasoning tasks requiring planning and global coherence, but they require more computation at inference…

机器学习 · 计算机科学 2026-02-04 Andre He , Sean Welleck , Daniel Fried

Inspired by the remarkable success of autoregressive models in language modeling, this paradigm has been widely adopted in visual generation. However, the sequential token-by-token decoding mechanism inherent in traditional autoregressive…

计算机视觉与模式识别 · 计算机科学 2026-01-01 Siyang Wang , Hanting Li , Wei Li , Jie Hu , Xinghao Chen , Feng Zhao

Molecule generation is central to a variety of applications. Current attention has been paid to approaching the generation task as subgraph prediction and assembling. Nevertheless, these methods usually rely on hand-crafted or external…

机器学习 · 计算机科学 2022-12-20 Xiangzhe Kong , Wenbing Huang , Zhixing Tan , Yang Liu

Generating molecular graphs is crucial in drug design and discovery but remains challenging due to the complex interdependencies between nodes and edges. While diffusion models have demonstrated their potentiality in molecular graph design,…

机器学习 · 计算机科学 2024-11-11 Xiaoyang Hou , Tian Zhu , Milong Ren , Dongbo Bu , Xin Gao , Chunming Zhang , Shiwei Sun

A common bottleneck for materials discovery is synthesis. While recent methodological advances have resulted in major improvements in the ability to predicatively design novel materials, researchers often still rely on trial-and-error…

计算物理 · 物理学 2021-01-27 Shreshth A. Malik , Rhys E. A. Goodall , Alpha A. Lee

Autoregressive sequence models based on deep neural networks, such as RNNs, Wavenet and the Transformer attain state-of-the-art results on many tasks. However, they are difficult to parallelize and are thus slow at processing long…

机器学习 · 计算机科学 2018-06-11 Łukasz Kaiser , Aurko Roy , Ashish Vaswani , Niki Parmar , Samy Bengio , Jakob Uszkoreit , Noam Shazeer

Neural populations exhibit latent dynamical structures that drive time-evolving spiking activities, motivating the search for models that capture both intrinsic network dynamics and external unobserved influences. In this work, we introduce…

机器学习 · 计算机科学 2026-03-11 Yue Song , T. Anderson Keller , Yisong Yue , Pietro Perona , Max Welling

Retrosynthesis is one of the fundamental problems in organic chemistry. The task is to identify reactants that can be used to synthesize a specified product molecule. Recently, computer-aided retrosynthesis is finding renewed interest from…

机器学习 · 计算机科学 2020-01-07 Hanjun Dai , Chengtao Li , Connor W. Coley , Bo Dai , Le Song

Autoregressive decoding limits the efficiency of transformers for Machine Translation (MT). The community proposed specific network architectures and learning-based methods to solve this issue, which are expensive and require changes to the…