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With the advent of high-throughput profiling methods, interest in reverse engineering the structure and dynamics of biochemical networks is high. Recently an algorithm for reverse engineering of biochemical networks was developed by…

定量方法 · 定量生物学 2010-01-18 Edgar Delgado-Eckert

Network reliability is a well-studied problem that requires to measure the probability that a target node is reachable from a source node in a probabilistic (or uncertain) graph, i.e., a graph where every edge is assigned a probability of…

社会与信息网络 · 计算机科学 2018-05-01 Arijit Khan , Francesco Bonchi , Francesco Gullo , Andreas Nufer

Graph neural networks (GNNs) for link prediction can loosely be divided into two broad categories. First, \emph{node-wise} architectures pre-compute individual embeddings for each node that are later combined by a simple decoder to make…

机器学习 · 计算机科学 2024-12-31 Yuxin Wang , Xiannian Hu , Quan Gan , Xuanjing Huang , Xipeng Qiu , David Wipf

Driven by the powerful representation ability of Graph Neural Networks (GNNs), plentiful GNN models have been widely deployed in many real-world applications. Nevertheless, due to distribution disparities between different demographic…

机器学习 · 计算机科学 2024-07-17 Zhixun Li , Yushun Dong , Qiang Liu , Jeffrey Xu Yu

Graph Neural Networks (GNNs) have shown success in learning from graph structured data containing node/edge feature information, with application to social networks, recommendation, fraud detection and knowledge graph reasoning. In this…

机器学习 · 计算机科学 2021-11-24 Xiang Song , Runjie Ma , Jiahang Li , Muhan Zhang , David Paul Wipf

We address fully-defective asynchronous networks, in which all links are subject to an unlimited number of alteration errors, implying that all messages in the network may be completely corrupted. Despite the possible intuition that such a…

分布式、并行与集群计算 · 计算机科学 2022-05-24 Keren Censor-Hillel , Shir Cohen , Ran Gelles , Gal Sela

The explosion of data available in life sciences is fueling an increasing demand for expressive models and computational methods. Graph transformation is a model for dynamic systems with a large variety of applications. We introduce a novel…

Networks provide an informative, yet non-redundant description of complex systems only if links represent truly dyadic relationships that cannot be directly traced back to node-specific properties such as size, importance, or coordinates in…

物理与社会 · 物理学 2017-06-12 Valerio Gemmetto , Alessio Cardillo , Diego Garlaschelli

This paper describes an end-to-end solution for the relationship prediction task in heterogeneous, multi-relational graphs. We particularly address two building blocks in the pipeline, namely heterogeneous graph representation learning and…

机器学习 · 计算机科学 2021-02-16 Xiao Qin , Nasrullah Sheikh , Berthold Reinwald , Lingfei Wu

Node embedding is the task of extracting concise and informative representations of certain entities that are connected in a network. Various real-world networks include information about both node connectivity and certain node attributes,…

社会与信息网络 · 计算机科学 2022-02-24 Charilaos I. Kanatsoulis , Nicholas D. Sidiropoulos

Graphical models are powerful tools to investigate complex dependency structures in high-throughput datasets. However, most existing graphical models make one of the two canonical assumptions: (i) a homogeneous graph with a common network…

统计方法学 · 统计学 2023-10-31 Tsung-Hung Yao , Yang Ni , Anindya Bhadra , Jian Kang , Veerabhadran Baladandayuthapani

Recent studies successfully learned static graph embeddings that are structurally fair by preventing the effectiveness disparity of high- and low-degree vertex groups in downstream graph mining tasks. However, achieving structure fairness…

机器学习 · 计算机科学 2024-06-21 Yicong Li , Yu Yang , Jiannong Cao , Shuaiqi Liu , Haoran Tang , Guandong Xu

Graph signals are functions of the underlying graph. When the edge-weight between a pair of nodes is high, the corresponding signals generally have a higher correlation. As a result, the signals can be represented in terms of a graph-based…

信号处理 · 电气工程与系统科学 2024-09-09 Rishabh Ravi , Kaushani Majumder , Kalp Vyas , Satish Mulleti

We consider structure learning of linear Gaussian structural equation models with weak edges. Since the presence of weak edges can lead to a loss of edge orientations in the true underlying CPDAG, we define a new graphical object that can…

统计方法学 · 统计学 2017-07-25 Marco F. Eigenmann , Preetam Nandy , Marloes H. Maathuis

Most real-world networks are noisy and incomplete samples from an unknown target distribution. Refining them by correcting corruptions or inferring unobserved regions typically improves downstream performance. Inspired by the impressive…

Graph neural networks (GNNs), in general, are built on the assumption of a static set of features characterizing each node in a graph. This assumption is often violated in practice. Existing methods partly address this issue through feature…

机器学习 · 计算机科学 2023-06-07 Shubham Gupta , Sahil Manchanda , Sayan Ranu , Srikanta Bedathur

Many complex systems are composed of interacting parts, and the underlying laws are usually simple and universal. While graph neural networks provide a useful relational inductive bias for modeling such systems, generalization to new system…

机器学习 · 计算机科学 2022-11-21 Zhe Li , Andreas S. Tolias , Xaq Pitkow

To capture the systemic complexity of international financial systems, network data is an important prerequisite. However, dyadic data is often not available, raising the need for methods that allow for reconstructing networks based on…

应用统计 · 统计学 2019-09-05 Michael Lebacher , Samantha Cook , Nadja Klein , Göran Kauermann

Trust evaluation is critical for many applications such as cyber security, social communication and recommender systems. Users and trust relationships among them can be seen as a graph. Graph neural networks (GNNs) show their powerful…

机器学习 · 计算机科学 2022-05-26 Cuiying Huo , Di Jin , Chundong Liang , Dongxiao He , Tie Qiu , Lingfei Wu

Inferring missing links or detecting spurious ones based on observed graphs, known as link prediction, is a long-standing challenge in graph data analysis. With the recent advances in deep learning, graph neural networks have been used for…

社会与信息网络 · 计算机科学 2023-01-03 Xingping Xian , Tao Wu , Xiaoke Ma , Shaojie Qiao , Yabin Shao , Chao Wang , Lin Yuan , Yu Wu