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Recently, the emergence of pre-trained models (PTMs) has brought natural language processing (NLP) to a new era. In this survey, we provide a comprehensive review of PTMs for NLP. We first briefly introduce language representation learning…

计算与语言 · 计算机科学 2021-06-24 Xipeng Qiu , Tianxiang Sun , Yige Xu , Yunfan Shao , Ning Dai , Xuanjing Huang

Efficient catalyst screening necessitates predictive models for adsorption energy, a key property of reactivity. However, prevailing methods, notably graph neural networks (GNNs), demand precise atomic coordinates for constructing graph…

计算工程、金融与科学 · 计算机科学 2023-09-04 Janghoon Ock , Chakradhar Guntuboina , Amir Barati Farimani

The paper benchmarks several Transformer models [4], to show how these models can judge sentiment from a news event. This signal can then be used for downstream modelling and signal identification for commodity trading. We find that…

统计金融 · 定量金融 2024-05-24 Edward Sharkey , Philip Treleaven

Generative pre-trained Transformer (GPT) has demonstrates its great success in natural language processing and related techniques have been adapted into molecular modeling. Considering that text is the most important record for scientific…

计算与语言 · 计算机科学 2023-05-29 Zequn Liu , Wei Zhang , Yingce Xia , Lijun Wu , Shufang Xie , Tao Qin , Ming Zhang , Tie-Yan Liu

The startling success of ChatGPT and other large language models (LLMs) using transformer-based generative neural network architecture in applications such as natural language processing and image synthesis has many researchers excited…

人工智能 · 计算机科学 2024-11-05 Venkat Venkatasubramanian , Arijit Chakraborty

Over the recent years, large pretrained language models (LM) have revolutionized the field of natural language processing (NLP). However, while pretraining on general language has been shown to work very well for common language, it has…

计算与语言 · 计算机科学 2022-12-20 Nicolas Webersinke , Mathias Kraus , Julia Anna Bingler , Markus Leippold

Natural Language Processing (NLP) faces challenges in the ability to quickly model polysemous words. The Grover's Algorithm (GA) is expected to solve this problem but lacks adaptability. To address the above dilemma, a Quantum Text…

量子物理 · 物理学 2025-06-03 Ren-Xin Zhao

Transformer-based masked language models such as BERT, trained on general corpora, have shown impressive performance on downstream tasks. It has also been demonstrated that the downstream task performance of such models can be improved by…

计算与语言 · 计算机科学 2023-05-04 Zhi Hong , Aswathy Ajith , Gregory Pauloski , Eamon Duede , Kyle Chard , Ian Foster

Molecular property prediction is essential for drug discovery. In recent years, deep learning methods have been introduced to this area and achieved state-of-the-art performances. However, most of existing methods ignore the intrinsic…

生物大分子 · 定量生物学 2022-11-04 Yuancheng Sun , Yimeng Chen , Weizhi Ma , Wenhao Huang , Kang Liu , Zhiming Ma , Wei-Ying Ma , Yanyan Lan

Accurate prediction of molecular properties is essential in drug discovery and related fields. However, existing graph neural networks (GNNs) often struggle to simultaneously capture both local and global molecular structures. In this work,…

机器学习 · 计算机科学 2025-08-26 XiaYu Liu , Chao Fan , Yang Liu , Hou-biao Li

Masked language modeling (MLM) pre-training methods such as BERT corrupt the input by replacing some tokens with [MASK] and then train a model to reconstruct the original tokens. While they produce good results when transferred to…

计算与语言 · 计算机科学 2020-03-25 Kevin Clark , Minh-Thang Luong , Quoc V. Le , Christopher D. Manning

Molecular machine learning has been maturing rapidly over the last few years. Improved methods and the presence of larger datasets have enabled machine learning algorithms to make increasingly accurate predictions about molecular…

Neural Networks (NNs) are effective models for refining the accuracy of molecular dynamics, opening up new fields of application. Typically trained bottom-up, atomistic NN potential models can reach first-principle accuracy, while…

化学物理 · 物理学 2025-05-19 Paul Fuchs , Stephan Thaler , Sebastien Röcken , Julija Zavadlav

In this paper, we present a study of the recent advancements which have helped bring Transfer Learning to NLP through the use of semi-supervised training. We discuss cutting-edge methods and architectures such as BERT, GPT, ELMo, ULMFit…

计算与语言 · 计算机科学 2019-10-17 Aditya Malte , Pratik Ratadiya

In recent years we have witnessed an increase in cyber threats and malicious software attacks on different platforms with important consequences to persons and businesses. It has become critical to find automated machine learning techniques…

密码学与安全 · 计算机科学 2021-03-08 Abir Rahali , Moulay A. Akhloufi

Molecular property prediction is a crucial foundation for drug discovery. In recent years, pre-trained deep learning models have been widely applied to this task. Some approaches that incorporate prior biological domain knowledge into the…

机器学习 · 计算机科学 2024-08-20 Tianyu Zhang , Yuxiang Ren , Chengbin Hou , Hairong Lv , Xuegong Zhang

The ability to perform ab initio molecular dynamics simulations using potential energies calculated on quantum computers would allow virtually exact dynamics for chemical and biochemical systems, with substantial impacts on the fields of…

Self-supervision is one of the hallmarks of representation learning in the increasingly popular suite of foundation models including large language models such as BERT and GPT-3, but it has not been pursued in the context of multivariate…

机器学习 · 计算机科学 2024-02-05 Xiao Shou , Dharmashankar Subramanian , Debarun Bhattacharjya , Tian Gao , Kristin P. Bennet

We introduce ProteinWorkshop, a comprehensive benchmark suite for representation learning on protein structures with Geometric Graph Neural Networks. We consider large-scale pre-training and downstream tasks on both experimental and…

In recent years the machine learning techniques have shown a great potential in various problems from a multitude of disciplines, including materials design and drug discovery. The high computational speed on the one hand and the accuracy…

化学物理 · 物理学 2018-05-09 Konstantin Gubaev , Evgeny V. Podryabinkin , Alexander V. Shapeev