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Catalyst Property Prediction with CatBERTa: Unveiling Feature Exploration Strategies through Large Language Models

Computational Engineering, Finance, and Science 2023-09-04 v1 Chemical Physics

Abstract

Efficient catalyst screening necessitates predictive models for adsorption energy, a key property of reactivity. However, prevailing methods, notably graph neural networks (GNNs), demand precise atomic coordinates for constructing graph representations, while integrating observable attributes remains challenging. This research introduces CatBERTa, an energy prediction Transformer model using textual inputs. Built on a pretrained Transformer encoder, CatBERTa processes human-interpretable text, incorporating target features. Attention score analysis reveals CatBERTa's focus on tokens related to adsorbates, bulk composition, and their interacting atoms. Moreover, interacting atoms emerge as effective descriptors for adsorption configurations, while factors such as bond length and atomic properties of these atoms offer limited predictive contributions. By predicting adsorption energy from the textual representation of initial structures, CatBERTa achieves a mean absolute error (MAE) of 0.75 eV-comparable to vanilla Graph Neural Networks (GNNs). Furthermore, the subtraction of the CatBERTa-predicted energies effectively cancels out their systematic errors by as much as 19.3% for chemically similar systems, surpassing the error reduction observed in GNNs. This outcome highlights its potential to enhance the accuracy of energy difference predictions. This research establishes a fundamental framework for text-based catalyst property prediction, without relying on graph representations, while also unveiling intricate feature-property relationships.

Keywords

Cite

@article{arxiv.2309.00563,
  title  = {Catalyst Property Prediction with CatBERTa: Unveiling Feature Exploration Strategies through Large Language Models},
  author = {Janghoon Ock and Chakradhar Guntuboina and Amir Barati Farimani},
  journal= {arXiv preprint arXiv:2309.00563},
  year   = {2023}
}

Comments

32 pages, 5 figures

R2 v1 2026-06-28T12:10:33.265Z