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Rapid development of modern sequencing platforms enabled an unprecedented growth of protein families databases. The abundance of sets composed of hundreds of thousands sequences is a great challenge for multiple sequence alignment…

基因组学 · 定量生物学 2017-03-03 Sebastin Deorowicz , Agnieszka Debudaj-Grabysz , Adam Gudys

Neural Architecture Search (NAS) has enabled automatic discovery of more efficient neural network architectures, especially for mobile and embedded vision applications. Although recent research has proposed ways of quickly estimating…

机器学习 · 计算机科学 2022-04-28 Saeejith Nair , Saad Abbasi , Alexander Wong , Mohammad Javad Shafiee

Recent innovations in Transformer-based large language models have significantly advanced the field of general-purpose neural language understanding and generation. With billions of trainable parameters, deployment of these large models…

硬件体系结构 · 计算机科学 2024-10-11 Haocheng Xu , Faraz Tahmasebi , Ye Qiao , Hongzheng Tian , Hyoukjun Kwon , Sitao Huang

Modern deep neural networks must demonstrate state-of-the-art accuracy while exhibiting low latency and energy consumption. As such, neural architecture search (NAS) algorithms take these two constraints into account when generating a new…

机器学习 · 计算机科学 2022-05-26 Saad Abbasi , Alexander Wong , Mohammad Javad Shafiee

Deep neural networks (DNN) are increasingly being accelerated on application-specific hardware such as the Google TPU designed especially for deep learning. Timing speculation is a promising approach to further increase the energy…

机器学习 · 计算机科学 2018-07-03 Jeff Zhang , Siddharth Garg

Recent years have witnessed tremendously improved efficiency of Automated Machine Learning (AutoML), especially Automated Deep Learning (AutoDL) systems, but recent work focuses on tabular, image, or NLP tasks. So far, little attention has…

机器学习 · 计算机科学 2022-07-25 Difan Deng , Florian Karl , Frank Hutter , Bernd Bischl , Marius Lindauer

Recent advance in sparse attention mechanisms has demonstrated strong potential for reducing the computational cost of long-context training and inference in large language models (LLMs). Native Sparse Attention (NSA), one state-of-the-art…

分布式、并行与集群计算 · 计算机科学 2025-10-14 Ran Yan , Youhe Jiang , Zhuoming Chen , Haohui Mai , Beidi Chen , Binhang Yuan

Data analytics systems commonly utilize in-memory query processing techniques to achieve better throughput and lower latency. Modern computers increasingly rely on Non-Uniform Memory Access (NUMA) architectures in order to achieve…

数据库 · 计算机科学 2020-01-28 Puya Memarzia , Suprio Ray , Virendra C Bhavsar

A key advantage of Recurrent Neural Networks (RNNs) over Transformers is their linear computational and space complexity enables faster training and inference for long sequences. However, RNNs are fundamentally unable to randomly access…

计算与语言 · 计算机科学 2025-11-04 Xiang Hu , Jiaqi Leng , Jun Zhao , Kewei Tu , Wei Wu

The use of low numerical precision is a fundamental optimization included in modern accelerators for Deep Neural Networks (DNNs). The number of bits of the numerical representation is set to the minimum precision that is able to retain…

信号处理 · 电气工程与系统科学 2019-11-12 Franyell Silfa , Jose-Maria Arnau , Antonio Gonzàlez

We develop a new efficient sequential approximate leverage score algorithm, SALSA, using methods from randomized numerical linear algebra (RandNLA) for large matrices. We demonstrate that, with high probability, the accuracy of SALSA's…

机器学习 · 统计学 2024-01-02 Ali Eshragh , Luke Yerbury , Asef Nazari , Fred Roosta , Michael W. Mahoney

In neural network topologies, algorithms are running on batches of data tensors. The batches of data are typically scheduled onto the computing cores which execute in parallel. For the algorithms running on batches of data, an optimal batch…

性能 · 计算机科学 2020-02-18 Phani Kumar Nyshadham , Mohit Sinha , Biswajit Mishra , H S Vijay

Similarity search is a key to a variety of applications including content-based search for images and video, recommendation systems, data deduplication, natural language processing, computer vision, databases, computational biology, and…

分布式、并行与集群计算 · 计算机科学 2017-07-11 Vincent T. Lee , Amrita Mazumdar , Carlo C. del Mundo , Armin Alaghi , Luis Ceze , Mark Oskin

Near-memory Computing (NMC) promises improved performance for the applications that can exploit the features of emerging memory technologies such as 3D-stacked memory. However, it is not trivial to find such applications and specialized…

性能 · 计算机科学 2019-06-26 Stefano Corda , Gagandeep Singh , Ahsan Javed Awan , Roel Jordans , Henk Corporaal

Traditional digital implementations of neural accelerators are limited by high power and area overheads, while analog and non-CMOS implementations suffer from noise, device mismatch, and reliability issues. This paper introduces a CMOS…

The matrix profile is an effective data mining tool that provides similarity join functionality for time series data. Users of the matrix profile can either join a time series with itself using intra-similarity join (i.e., self-join) or…

Data movement is becoming the dominant contributor to the time and energy costs of computation across a wide range of application domains. However, time complexity is inadequate to analyze data movement. This work expands upon Data Movement…

数据结构与算法 · 计算机科学 2022-03-08 Wesley Smith , Aidan Goldfarb , Chen Ding

The inherent diversity of computation types within the deep neural network (DNN) models often requires a variety of specialized units in hardware processors, which limits computational efficiency, increasing both inference latency and power…

机器学习 · 计算机科学 2024-08-21 Ruiqi Sun , Siwei Ye , Jie Zhao , Xin He , Jianzhe Lin , Yiran Li , An Zou

The GEneral Matrix Multiplication (GEMM) is one of the essential algorithms in scientific computing. Single-thread GEMM implementations are well-optimised with techniques like blocking and autotuning. However, due to the complexity of…

分布式、并行与集群计算 · 计算机科学 2026-01-15 Yufan Xia , Marco De La Pierre , Amanda S. Barnard , Giuseppe Maria Junior Barca

Optimizing resource utilization in target platforms is key to achieving high performance during DNN inference. While optimizations have been proposed for inference latency, memory footprint, and energy consumption, prior hardware-aware…

机器学习 · 计算机科学 2022-03-24 Ahmet Caner Yüzügüler , Nikolaos Dimitriadis , Pascal Frossard