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Modeling living systems at the collective scale can be very challenging because the individual constituents can themselves be complex and the respective interactions between the constituents are not fully understood. With the advent of high…

软凝聚态物质 · 物理学 2021-10-27 Ahmad Borzou , Alison E. Patteson , J. M. Schwarz

Active particles contain internal degrees of freedom with the ability to take in and dissipate energy and, in the process, execute systematic movement. Examples include all living organisms and their motile constituents such as molecular…

软凝聚态物质 · 物理学 2015-05-18 Sriram Ramaswamy

A dissipative particle dynamics (DPD) model for the quantitative simulation of biofilm growth controlled by substrate (nutrient) consumption, advective and diffusive substrate transport, and hydrodynamic interactions with fluid flow…

计算物理 · 物理学 2018-08-03 Zhijie Xu , Paul Meakin , Alexandre Tartakovsky , Timothy. D. Scheibe

Active matter systems such as eukaryotic cells and bacteria continuously transform chemical energy to motion. Hence living systems exert active stresses on the complex environments in which they reside. One recurring aspect of this…

软凝聚态物质 · 物理学 2020-02-27 Emmanuel Lance Christopher VI M. Plan , Julia Yeomans , Amin Doostmohammadi

In bacterial populations, cells are able to cooperate in order to yield complex collective functionalities. Interest in population-level cellular behaviour is increasing, due to both our expanding knowledge of the underlying biological…

多智能体系统 · 计算机科学 2012-11-07 Angel Goni-Moreno , Martyn Amos

This article reviews how organisms learn and recognize the world through the dynamics of neural networks from the perspective of Bayesian inference, and introduces a view on how such dynamics is described by the laws for the entropy of…

神经元与认知 · 定量生物学 2020-06-24 Hideaki Shimazaki

Bacteria can adjust the structure of colonies and biofilms to enhance their survival rate under external stress. Here, we explore the link between bacterial interaction forces and colony structure. We show that the activity of extracellular…

Recently, plenty research has been done on discovering the role of energy dissipation in biological networks, most of which focus on the relationship of dissipation and functionality. However, the development of networks science urged us to…

生物物理 · 物理学 2026-05-20 Bowen Shi , Long Qian , Qi Ouyang

We propose a model of multispecies populations surviving on distributed resources. System dynamics are investigated under changes in abiotic factors such as the climate, as parameterized through environmental temperature. In particular, we…

种群与进化 · 定量生物学 2017-10-25 I. Sudakov , S. A. Vakulenko , D. Kirievskaya , K. M. Golden

The energy dissipated by a living organism is commonly identified with heat generation. However, as cells exchange metabolites with their environment they also dissipate energy in the form of chemical entropy. How dissipation is distributed…

其他定量生物学 · 定量生物学 2025-10-09 Tommaso Cossetto , Jonathan Rodenfels , Pablo Sartori

The ability of an Evolutionary Algorithm (EA) to find a global optimal solution depends on its capacity to find a good rate between exploitation of found so far elements and exploration of the search space. Inspired by natural phenomena,…

人工智能 · 计算机科学 2014-05-21 Erik Cuevas , Alonso Echavarria , Marte A. Ramirez-Ortegon

Active building energy management holds potential to reduce global energy-related emissions and support flexible operations of future low-carbon systems. This requires to integrate diverse objectives and engage multiple stakeholders.…

系统与控制 · 电气工程与系统科学 2023-10-25 Hanmin Cai , Philipp Heer

Biological and robotic systems often operate in confined environments where material must be gathered without centralized control. Inspired by the effective collection strategies of aquatic worms (Lumbriculus variegatus and Tubifex…

软凝聚态物质 · 物理学 2025-05-09 R. Sinaasappel , K. R. Prathyusha , H. Tuazon , E. Mirzahossein , P. Illien , S. Bhamla , A. Deblais

Biofilms are communities of bacteria that exhibit a multitude of multiscale biomechanical behaviors. Recent experimental advances have lead to characterizations of these behaviors in terms of measurements of the viscoelastic moduli of…

细胞行为 · 定量生物学 2017-07-19 Jay A. Stotsky , Vanja Dukic , David M. Bortz

Bacteria can spontaneously develop collective motions by aligning their motions in dense systems. Here, we show that bacteria can also respond collectively to an alternating electrical field and form dynamic clusters oscillating at the same…

软凝聚态物质 · 物理学 2022-10-11 Mei Mei Bao , Isaiah Eze Igwe , Kang Chen , Tian Hui Zhang

Discrete structures play an important role in applications like program language modeling and software engineering. Current approaches to predicting complex structures typically consider autoregressive models for their tractability, with…

机器学习 · 计算机科学 2020-11-12 Hanjun Dai , Rishabh Singh , Bo Dai , Charles Sutton , Dale Schuurmans

A primary motivation for our research in Digital Ecosystems is the desire to exploit the self-organising properties of biological ecosystems. Ecosystems are thought to be robust, scalable architectures that can automatically solve complex,…

神经与进化计算 · 计算机科学 2016-11-18 G. Briscoe , S. Sadedin , G. Paperin

Partitioning of (bio)materials in polymeric mixtures is a key phenomenon both in cellular environments, as well as in industrial applications. In cells, several macromolecules are suspended within different biomolecular phases. On the other…

软凝聚态物质 · 物理学 2025-10-15 Vikki Anand Varma , Alberto Scacchi

Self-propelled colloidal objects, such as motile bacteria or synthetic microswimmers, have microscopically irreversible individual dynamics - a feature they share with all living systems. The incoherent behaviour of individual swimmers can…

软凝聚态物质 · 物理学 2016-04-06 J. Stenhammar , R. Wittkowski , D. Marenduzzo , M. E. Cates

Proliferation and motility are ubiquitous drivers of activity in biological systems. Here, we study a dense binary mixture of motile and proliferating particles with exclusively repulsive interactions, where homeostasis in the proliferating…

软凝聚态物质 · 物理学 2025-06-11 Lukas Hupe , Joanna M. Materska , David Zwicker , Ramin Golestanian , Bartlomiej Waclaw , Philip Bittihn