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We investigate the properties of membranes under tension by Monte-Carlo simulations of a generic coarse-grained model for lipid bilayers. We give a comprising overview of the behavior of several membrane characteristics, such as the area…

生物物理 · 物理学 2010-03-17 Jörg Neder , Beate West , Peter Nielaba , Friederike Schmid

We study an elasticity model for compressed protein monolayers or particle rafts at a liquid interface. Based on the microscopic view of hard-core particles with soft shells, a bead-spring model is formulated and analyzed in terms of…

软凝聚态物质 · 物理学 2015-05-12 Sebastian Knoche , Jan Kierfeld

We propose a novel mechanism of cell motility, which relies on the coupling of actin polymerization at the cell membrane to geometric confinement. We consider a polymerizing viscoelastic cytoskeletal gel confined in a narrow channel, and…

软凝聚态物质 · 物理学 2009-02-13 R. J. Hawkins , M. Piel , G. Faure-Andre , A. M. Lennon-Dumenil , J. F. Joanny , J. Prost , R. Voituriez

Cytoskeletal motors known as motor proteins are molecules that drive cellular transport along several parallel cytoskeletal filaments and support many biological processes. Experimental evidences suggest that they interact with the nearest…

统计力学 · 物理学 2017-11-22 Tripti Midha , A. K. Gupta

We formulate a simple effective model to describe molecular interactions in a lipid monolayer. The model represents lipid molecules in terms of two-dimensional anisotropic particles on the plane of the monolayer. These particles interact…

软凝聚态物质 · 物理学 2019-10-02 E. Velasco , L. Mederos

The spatiotemporal coordination and regulation of cell proliferation is fundamental in many aspects of development and tissue maintenance. Cells have the ability to adapt their division rates in response to mechanical constraints, yet we do…

定量方法 · 定量生物学 2024-04-25 Carles Falcó , Daniel J. Cohen , José A. Carrillo , Ruth E. Baker

Tissue dynamics and collective cell motion are crucial biological processes. Their biological machinery is mostly known, and simulation models such as the "active vertex model" (AVM) exist and yield reasonable agreement with experimental…

软凝聚态物质 · 物理学 2023-11-16 Gloria Triguero-Platero , Falko Ziebert , Luis L. Bonilla

Mineralized collagen microfibrils in human bone provide its mechanical properties (stiffness, elasticity, ductility, energy dissipation and strength). However, detailed 3D finite element models describing the mechanical behaviour of the…

组织与器官 · 定量生物学 2012-03-01 Ridha Hambli , Abdelwahed Barkaoui

A continuum model of epithelial tissue mechanics was formulated using cellular-level mechanical ingredients and cell morphogenetic processes, including cellular shape changes and cellular rearrangements. This model can include finite…

组织与器官 · 定量生物学 2017-09-06 Shuji Ishihara , Philippe Marcq , Kaoru Sugimura

The stability of the boundary between regenerating tissues is essential to the maintenance of their integrity and biological function. Stress is known to play an important role in the regulation of cell division, cell growth and cell death,…

生物物理 · 物理学 2024-11-20 Luis Gómez-Nava , Djamel Chekroun , Ioan Ionescu , Marc Durand

The shape of materials is often subject to a number of geometric constraints that limit the size of the system or fix the structure of its boundary. In soft and biological materials, however, these constraints are not always hard, but are…

软凝聚态物质 · 物理学 2013-10-09 Luca Giomi

Microphase separation of membrane components is thought to play an important role in many physiological processes, from cell signaling to endocytosis and cellular trafficking. Here, we study how variations in the membrane composition can be…

亚细胞过程 · 定量生物学 2015-05-20 Pierre Sens , Matthew S. Turner

Keratin are among the most abundant proteins in epithelial cells. Functions of the keratin network in cells are shaped by their dynamical organization. Using a collection of experimentally-driven mathematical models, different hypotheses…

亚细胞过程 · 定量生物学 2015-08-19 Stephanie Portet , Anotida Madzvamuse , Andy Chung , Rudolf E. Leube , Reinhard Windoffer

Elastic confinements are an important component of many biological systems and dictate the transport properties of suspended particles under flow. In this chapter, we review the Brownian motion of a particle moving in the vicinity of a…

软凝聚态物质 · 物理学 2022-10-28 Abdallah Daddi-Moussa-Ider , Stephan Gekle

Understanding cellular response to mechanical forces is immensely important for a plethora of biological processes. Focal adhesions are multi-molecular protein assemblies that connect the cell to the extracellular matrix and play a pivotal…

生物物理 · 物理学 2019-10-25 Rumi De

Rheological responses are the most relevant features to describe soft matter. So far, such constitutive relations are still not well understood in terms of small scale properties, although this knowledge would help the design of synthetic…

软凝聚态物质 · 物理学 2020-08-12 J. L. B. de Araujo , J. S. de Sousa , W. P. Ferreira , C. L. N. Oliveira

We present initial results regarding the existence, stability and interaction of linear and nonlinear vibrational modes in a system of two coupled, one dimensional lattices with unequal numbers of masses. The effects on these nonlinear…

生物物理 · 物理学 2007-05-23 Kyle Forinash

We present a simple model of protein folding dynamics that captures key qualitative elements recently seen in all-atom simulations. The goals of this theory are to serve as a simple formalism for gaining deeper insight into the physical…

生物物理 · 物理学 2015-05-19 Vijay S. Pande

Using a popular vertex-based model to describe a spatially disordered planar epithelial monolayer, we examine the relationship between cell shape and mechanical stress at the cell and tissue level. Deriving expressions for stress tensors…

细胞行为 · 定量生物学 2017-08-14 Alexander Nestor-Bergmann , Georgina Goddard , Sarah Woolner , Oliver Jensen

We study the coupling between the structural dynamics and rheological response of charged colloidal monolayers at water/oil interfaces, driven into steady shear by a microdisk rotating at a controlled angular velocity. The flow causes…

软凝聚态物质 · 物理学 2015-09-14 Ivo Buttinoni , Zachary A. Zell , Todd M. Squires , Lucio Isa
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