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The COVID-19 pandemic, caused by SARS-CoV-2, highlighted the critical need for accurate prediction of disease severity to optimize healthcare resource allocation and patient management. The spike protein, which facilitates viral entry into…

机器学习 · 计算机科学 2025-06-02 Caio Cheohen , Vinnícius M. S. Gomes , Manuela L. da Silva

Despite the availability of effective vaccines, the persistence of SARS-CoV-2 suggests that co-circulation with other pathogens and resulting multi-epidemics may become increasingly frequent. To better forecast and control the risk of such…

The ROC ontology for country responses to COVID-19 provides a model for collecting, linking and sharing data on the COVID-19 pandemic. It follows semantic standardization (W3C standards RDF, OWL, SPARQL) for the representation of concepts…

数字图书馆 · 计算机科学 2021-04-16 Jamal Al Qundus , Ralph Schäfermeier , Naouel Karam , Silvio Peikert , Adrian Paschke

Epidemiologic and genetic studies in chronic obstructive pulmonary disease (COPD) and many complex diseases suggest subgroup disparities (e.g., by sex). We consider this problem from the standpoint of integrative analysis where we combine…

统计方法学 · 统计学 2023-09-26 J. Butts , C. Wendt , R. Bowler , C. P. Hersh , Q. Long , L. Eberly , S. E. Safo

Quantitative methods in Human-Robot Interaction (HRI) research have primarily relied upon randomized, controlled experiments in laboratory settings. However, such experiments are not always feasible when external validity, ethical…

机器人学 · 计算机科学 2023-11-01 Jaron J. R. Lee , Gopika Ajaykumar , Ilya Shpitser , Chien-Ming Huang

Respiratory symptoms can be a caused by different underlying conditions, and are often caused by viral infections, such as Influenza-like illnesses or other emerging viruses like the Coronavirus. These respiratory viruses, often, have…

信号处理 · 电气工程与系统科学 2020-07-02 Abdelkader Nasreddine Belkacem , Sofia Ouhbi , Abderrahmane Lakas , Elhadj Benkhelifa , Chao Chen

The network representation is becoming increasingly popular for the description of cardiovascular interactions based on the analysis of multiple simultaneously collected variables. However, the traditional methods to assess network links…

Facing a global challenge with over 6.9 million fatalities, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the causative agent of CoViD-19, demands novel and comprehensive approaches to understand its complex dynamics. This…

动力系统 · 数学 2023-06-05 João Paulo Simões Maurício de Carvalho

Identifying long COVID symptoms is a challenging task, primarily due to the reliance on patient reports and the lack of disease specific biomarkers. The objective of this study is to identify individual long COVID symptoms, post COVID 19…

其他定量生物学 · 定量生物学 2025-10-02 Abdi Reza

Cardiovascular disease is one of the chronic diseases that is on the rise. The complications occur when cardiovascular disease is not discovered early and correctly diagnosed at the right time. Various machine learning approaches, including…

Background: The COVID-19 pandemic clock is ticking and the survival of many of mankind's modern institutions and or survival of many individuals is at stake. There is a need for treatments to significantly reduce the morbidity and mortality…

基因组学 · 定量生物学 2020-12-08 Ali Ebrahimpour Boroojeny , Hamidreza Chitsaz

Disease Intelligence (DI) is based on the acquisition and aggregation of fragmented knowledge of diseases at multiple sources all over the world to provide valuable information to doctors, researchers and information seeking community. Some…

人工智能 · 计算机科学 2012-11-16 Prabath Chaminda Abeysiriwardana , Saluka R Kodituwakku

Background: Protein-protein interaction (PPI) network analyses are highly valuable in deciphering and understanding the intricate organisation of cellular functions. Nevertheless, the majority of available protein-protein interaction…

分子网络 · 定量生物学 2015-01-08 Oussema Souiai , Fatma Guerfali , Slimane Ben Miled , Christine Brun , Alia Benkahla

A method of Transitional Automorphic Mapping of the Genome on Itself (TAMGI) is aimed at combining detection and reconstruction of correlational and quasi-periodic motifs in the viral genomic RNA/DNA sequences. The motifs reconstructed by…

定量方法 · 定量生物学 2021-08-03 Vladimr R. Chechetkin , Vasily V. Lobzin

Specific elements of viral genomes regulate interactions within host cells. Here, we calculated the secondary structure content of >2500 coronaviruses and computed >100000 human protein interactions with severe acute respiratory syndrome…

生物大分子 · 定量生物学 2020-04-30 Andrea Vandelli , Michele Monti , Edoardo Milanetti , Riccardo Delli Ponti , Gian Gaetano Tartaglia

We present CRISP (COVID-19 Risk Score Prediction), a probabilistic graphical model for COVID-19 infection spread through a population based on the SEIR model where we assume access to (1) mutual contacts between pairs of individuals across…

社会与信息网络 · 计算机科学 2022-07-04 Ralf Herbrich , Rajeev Rastogi , Roland Vollgraf

This paper investigates the relationships among key elements of the scientific research network, namely articles, researchers, and journals. We introduce a novel approach to use semantic information through the HITS algorithm-based…

社会与信息网络 · 计算机科学 2024-11-22 Mehmet Emre Akbulut , Yusuf Erdem Nacar

Coronaviruses are a class of virus responsible of the recent outbreak of Human Severe Acute Respiratory Syndrome. The molecular machinery behind the viral entry and thus infectivity is based on the formation of the complex of virus spike…

生物大分子 · 定量生物学 2020-03-12 Luisa Di Paola , Alessandro Giuliani

The integration of machine learning methods into bioinformatics provides particular benefits in identifying how therapeutics effective in one context might have utility in an unknown clinical context or against a novel pathology. We aim to…

机器学习 · 计算机科学 2020-06-29 Semih Cantürk , Aman Singh , Patrick St-Amant , Jason Behrmann

Infections depend on interactions between pathogen and host proteins, but comprehensively mapping these interactions is challenging and labor intensive. Many biological networks have hierarchical, scale-free structure, so we developed a…

分子网络 · 定量生物学 2025-11-19 Xiaoqiong Xia , Cesar de la Fuente-Nunez