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The junction-tree representation provides an attractive structural property for organizing a decomposable graph. In this study, we present two novel stochastic algorithms, which we call the junction-tree expander and junction-tree collapser…

统计理论 · 数学 2021-02-16 Jimmy Olsson , Tetyana Pavlenko , Felix L. Rios

We give an algorithm for finding the arboricity of a weighted, undirected graph, defined as the minimum number of spanning forests that cover all edges of the graph, in $\sqrt{n} m^{1+o(1)}$ time. This improves on the previous best bound of…

数据结构与算法 · 计算机科学 2025-07-22 Ruoxu Cen , Henry Fleischmann , George Z. Li , Jason Li , Debmalya Panigrahi

The arithmetic-geometric index is a newly proposed degree-based graph invariant in mathematical chemistry. We give a sharp upper bound on the value of this invariant for connected chemical graphs of given order and size and characterize the…

In this paper, we propose a novel graph kernel, namely the Quantum-based Entropic Subtree Kernel (QESK), for Graph Classification. To this end, we commence by computing the Average Mixing Matrix (AMM) of the Continuous-time Quantum Walk…

机器学习 · 计算机科学 2022-12-13 Lu Bai , Lixin Cui , Edwin R. Hancock

This study introduces a new method of visualizing complex tree structured objects. The usefulness of this method is illustrated in the context of detecting unexpected features in a data set of very large trees. The major contribution is a…

应用统计 · 统计学 2012-02-14 Burcu Aydin , Gabor Pataki , Haonan Wang , Alim Ladha , Elizabeth Bullitt , J. S. Marron

The demand of two-dimensional source coding and constrained coding has been getting higher these days, but compared to the one-dimensional case, many problems have remained open as the analysis is cumbersome. A main reason for that would be…

信息论 · 计算机科学 2016-02-03 Takahiro Ota , Akiko Manada , Hiroyoshi Morita

To unravel the structures of C12H12O7 isomers, identified as light-absorbing photooxidation products of syringol in atmospheric chamber experiments, we apply a graph-based molecule generator and machine learning workflow. To accomplish this…

Generative molecular design has moved from proof-of-concept to real-world applicability, as marked by the surge in very recent papers reporting experimental validation. Key challenges in explainability and sample efficiency present…

生物大分子 · 定量生物学 2024-03-05 Jeff Guo , Philippe Schwaller

In previous work, we defined the intersection graph of a chord diagram associated with a string link (as in the theory of finite type invariants). In this paper, we look at the case when this graph is a tree, and we show that in many cases…

几何拓扑 · 数学 2009-01-10 Blake Mellor

In this paper, we study the graph isomorphism and graph automorphism problems. We propose a novel technique to analyze graph isomorphism and graph automorphism. Further we handled some strongly regular datasets for prove the efficiency of…

组合数学 · 数学 2019-06-19 Sivakumar Karunakaran , Lavanya Selvaganesh

Generative deep learning has become pivotal in molecular design for drug discovery, materials science, and chemical engineering. A widely used paradigm is to pretrain neural networks on string representations of molecules and fine-tune them…

This paper studies the structure of graphs with given tree-width and excluding a fixed complete bipartite subgraph, which generalises the bounded degree setting. We give a new structural description of such graphs in terms of so-called…

组合数学 · 数学 2025-12-15 Chun-Hung Liu , David R. Wood

Quantitative structure-activity relationship (QSAR) is a computer modeling technique for identifying relationships between the structural properties of chemical compounds and biological activity. QSAR modeling is necessary for drug…

机器学习 · 计算机科学 2024-06-19 Rifkat Davronova , Fatima Adilovab

In deep neural networks, better results can often be obtained by increasing the complexity of previously developed basic models. However, it is unclear whether there is a way to boost performance by decreasing the complexity of such models.…

机器学习 · 计算机科学 2022-06-07 Junran Wu , Shangzhe Li , Jianhao Li , Yicheng Pan , Ke Xu

We develop estimation for potentially high-dimensional additive structural equation models. A key component of our approach is to decouple order search among the variables from feature or edge selection in a directed acyclic graph encoding…

统计方法学 · 统计学 2014-12-02 Peter Bühlmann , Jonas Peters , Jan Ernest

The Burling sequence is a sequence of triangle-free graphs of increasing chromatic number. Any graph which is an induced subgraph of a graph in this sequence is called a Burling graph. These graphs have attracted some attention because they…

组合数学 · 数学 2025-03-06 Pegah Pournajafi , Nicolas Trotignon

Geometric modeling by constraints, whose applications are of interest to communities from various fields such as mechanical engineering, computer aided design, symbolic computation or molecular chemistry, is now integrated into standard…

计算几何 · 计算机科学 2018-03-06 Samy Ait-Aoudia , Adel Moussaoui , Khaled Abid , Dominique Michelucci

Applying machine learning to molecules is challenging because of their natural representation as graphs rather than vectors.Several architectures have been recently proposed for deep learning from molecular graphs, but they suffer from…

机器学习 · 统计学 2020-09-15 Jaak Simm , Adam Arany , Edward De Brouwer , Yves Moreau

In this paper we count all the subpaths of a given graph G; including the subpaths of length zero, and we call this quantity the subpath number of G. The subpath number is related to the extensively studied number of subtrees, as it can be…

组合数学 · 数学 2025-03-04 Martin Knor , Jelena Sedlar , Riste Škrekovski , Yu Yang

We investigate spectral properties of quantum graphs in the form of a periodic chain of rings with a connecting link between each adjacent pair, assuming that wave functions at the vertices are matched through conditions manifestly…

数学物理 · 物理学 2022-07-12 Marzieh Baradaran , Pavel Exner , Milos Tater