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Accurate representation of the molecular electrostatic potential, which is often expanded in distributed multipole moments, is crucial for an efficient evaluation of intermolecular interactions. Here we introduce a machine learning model…

化学物理 · 物理学 2017-10-09 Tristan Bereau , Denis Andrienko , O. Anatole von Lilienfeld

To address the computational challenges of ab initio molecular dynamics and the accuracy limitations of empirical force fields, the introduction of machine learning force fields has proven effective in various systems including metals and…

软凝聚态物质 · 物理学 2023-12-18 Junbao Hu , Liyang Zhou , Jian Jiang

This chapter provides a tutorial overview of first principles methods to describe the properties of matter at the ground state or equilibrium. It begins with a brief introduction to quantum and statistical mechanics for predicting the…

计算工程、金融与科学 · 计算机科学 2020-10-14 Jianzhong Wu , Mengyang Gu

Representations of multivariate functions with low-dimensional functions that depend on subsets of original coordinates (corresponding of different orders of coupling) are useful in quantum dynamics and other applications, especially where…

机器学习 · 计算机科学 2024-06-26 Sergei Manzhos , Manabu Ihara

Molecular evolution is the process of simulating the natural evolution of molecules in chemical space to explore potential molecular structures and properties. The relationships between similar molecules are often described through…

生物大分子 · 定量生物学 2025-01-28 Kun Li , Longtao Hu , Xiantao Cai , Jia Wu , Wenbin Hu

One of the primary challenges in quantum chemistry is the accurate modeling of strong electron correlation. While multireference methods effectively capture such correlation, their steep scaling with system size prohibits their application…

Drawing and visualisation of molecular structures are some of the most common tasks carried out in structural glycobiology, typically using various software. In this perspective article, we outline developments in the computational tools…

定量方法 · 定量生物学 2020-10-07 Kanhaya Lal , Rafael Bermeo , Serge Pérez

Molecular dynamics simulations are indispensable for exploring the behavior of atoms and molecules. Grounded in quantum mechanical principles, quantum molecular dynamics provides high predictive power but its computational cost is dominated…

化学物理 · 物理学 2025-09-10 Siu Wun Cheung , Youngsoo Choi , Jean-Luc Fattebert , Daniel Osei-Kuffuor

In this paper, we review some recent work on amorphous materials using current "first principles" electronic structure/molecular dynamics techniques. The main theme of the paper is to emphasize new directions in the use of such ab initio…

无序系统与神经网络 · 物理学 2007-05-23 D. A. Drabold , P. Biswas , D. Tafen , R. Atta-Fynn

Machine learning potentials offer a revolutionary, unifying framework for molecular simulations across scales, from quantum chemistry to coarse-grained models. Here, I explore their potential to dramatically improve accuracy and scalability…

化学物理 · 物理学 2024-08-26 Gianni De Fabritiis

The central approximation made in classical molecular dynamics simulation of materials is the interatomic potential used to calculate the forces on the atoms. Great effort and ingenuity is required to construct viable functional forms and…

计算物理 · 物理学 2019-06-26 Mitchell A. Wood , Mary Alice Cusentino , Brian D. Wirth , Aidan P. Thompson

Physics-based, atom-centered machine learning (ML) representations have been instrumental to the effective integration of ML within the atomistic simulation community. Many of these representations build off the idea of atoms as having…

Craig interpolation and uniform interpolation have many applications in knowledge representation, including explainability, forgetting, modularization and reuse, and even learning. At the same time, many relevant knowledge representation…

人工智能 · 计算机科学 2025-12-10 Jean Christoph Jung , Patrick Koopmann , Matthias Knorr

Heavy-ion collisions provide a window into the properties of many-body systems of deconfined quarks and gluons. Understanding the collective properties of quarks and gluons is possible by comparing models of heavy-ion collisions to…

核理论 · 物理学 2025-02-06 Jean-François Paquet

We present a simple, yet general, end-to-end deep neural network representation of the potential energy surface for atomic and molecular systems. This methodology, which we call Deep Potential, is "first-principle" based, in the sense that…

计算物理 · 物理学 2020-07-20 Jiequn Han , Linfeng Zhang , Roberto Car , Weinan E

Machine learning has emerged as an invaluable tool in many research areas. In the present work, we harness this power to predict highly accurate molecular infrared spectra with unprecedented computational efficiency. To account for…

化学物理 · 物理学 2021-03-16 Michael Gastegger , Jörg Behler , Philipp Marquetand

High-throughput computational and experimental design of materials aided by machine learning have become an increasingly important field in material science. This area of research has emerged in leaps and bounds in the thermal sciences, in…

Faithfully representing chemical environments is essential for describing materials and molecules with machine learning approaches. Here, we present a systematic classification of these representations and then investigate: (i) the…

材料科学 · 物理学 2020-10-28 Berk Onat , Christoph Ortner , James R. Kermode

Accurate extraction of molecular representations is a critical step in the drug discovery process. In recent years, significant progress has been made in molecular representation learning methods, among which multi-modal molecular…

机器学习 · 计算机科学 2025-05-13 Rong Yin , Ruyue Liu , Xiaoshuai Hao , Xingrui Zhou , Yong Liu , Can Ma , Weiping Wang

While most work on the quantum simulation of chemistry has focused on computing energy surfaces, a similarly important application requiring subtly different algorithms is the computation of energy derivatives. Almost all molecular…