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A major challenge in next-generation genome sequencing (NGS) is to assemble massive overlapping short reads that are randomly sampled from DNA fragments. To complete assembling, one needs to finish a fundamental task in many leading…

基因组学 · 定量生物学 2015-05-26 Yang Li , XifengYan

A cheap method for constructing canonical models and complete moduli for complex projective varieties with a structure called "rational plurifibration" is given. A result about semistable reduction (whose nature is slightly different from…

代数几何 · 数学 2007-05-23 Dan Abramovich

Lookup tables (finite maps) are a ubiquitous data structure. In pure functional languages they are best represented using trees instead of hash tables. In pure functional languages within constructive logic, without a primitive integer…

计算机科学中的逻辑 · 计算机科学 2023-09-06 Andrew W Appel , Xavier Leroy

This paper proposes superblock pruning (SP) during top-k online document retrieval for learned sparse representations. SP structures the sparse index as a set of superblocks on a sequence of document blocks and conducts a superblock-level…

信息检索 · 计算机科学 2026-02-04 Parker Carlson , Wentai Xie , Shanxiu He , Tao Yang

Reduced k-means clustering is a method for clustering objects in a low-dimensional subspace. The advantage of this method is that both clustering of objects and low-dimensional subspace reflecting the cluster structure are simultaneously…

统计理论 · 数学 2014-02-14 Yoshikazu Terada

Hashing has recently sparked a great revolution in cross-modal retrieval because of its low storage cost and high query speed. Recent cross-modal hashing methods often learn unified or equal-length hash codes to represent the multi-modal…

计算机视觉与模式识别 · 计算机科学 2019-09-13 Xin Liu , Zhikai Hu , Haibin Ling , Yiu-ming Cheung

(Im)balance indices can be used to quantify the (im)balance of trees by assigning numerical scores to them. An easy way to generate a new index is to construct a compound index, e.g., a linear combination of established indices. Two of the…

种群与进化 · 定量生物学 2026-04-20 Linda Knüver , Mareike Fischer

A tableau calculus is proposed, based on a compressed representation of clauses, where literals sharing a similar shape may be merged. The inferences applied on these literals are fused when possible, which reduces the size of the proof. It…

计算机科学中的逻辑 · 计算机科学 2018-01-15 Michael Peter Lettmann , Nicolas Peltier

We present two different strategies to extend the classical multi-label chaining approach to handle imprecise probability estimates. These estimates use convex sets of distributions (or credal sets) in order to describe our uncertainty…

机器学习 · 统计学 2021-07-21 Yonatan Carlos Carranza Alarcón , Sébastien Destercke

The short note describes the chart parser for multimodal type-logical grammars which has been developed in conjunction with the type-logical treebank for French. The chart parser presents an incomplete but fast implementation of proof…

计算与语言 · 计算机科学 2018-04-09 Richard Moot

We present MultivariatePowerSeries, a Maple library introduced in Maple 2021, providing a variety of methods to study formal multivariate power series and univariate polynomials over such series. This library offers a simple and easy-to-use…

符号计算 · 计算机科学 2021-06-30 Mohammadali Asadi , Alexander Brandt , Mahsa Kazemi , Marc Moreno Maza , Erik Postma

Document listing on string collections is the task of finding all documents where a pattern appears. It is regarded as the most fundamental document retrieval problem, and is useful in various applications. Many of the fastest-growing…

数据结构与算法 · 计算机科学 2019-02-21 Dustin Cobas , Gonzalo Navarro

We consider the problem of communication efficient secure distributed matrix multiplication. The previous literature has focused on reducing the number of servers as a proxy for minimizing communication costs. The intuition being, that the…

信息论 · 计算机科学 2022-06-10 Roberto Assis Machado , Rafael G. L. D'Oliveira , Salim El Rouayheb , Daniel Heinlein

To cater to the needs of (Zero Knowledge) proofs for (mathematical) proofs, we describe a method to transform formal sentences in 2x2-matrices over multivariate polynomials with integer coefficients, such that usual proof-steps like…

逻辑 · 数学 2025-09-17 Mihai Prunescu

We present the pseudo-particle multipole method (P2M2), a new method to handle multipole expansion in fast multipole method and treecode. This method uses a small number of pseudo-particles to express multipole expansion. With this method,…

天体物理学 · 物理学 2007-05-23 Atsushi Kawai , Junichiro Makino

Random Indexing (RI) K-tree is the combination of two algorithms for clustering. Many large scale problems exist in document clustering. RI K-tree scales well with large inputs due to its low complexity. It also exhibits features that are…

信息检索 · 计算机科学 2010-02-02 Christopher M. De Vries , Lance De Vine , Shlomo Geva

With the aim to propose a non parametric hypothesis test, this paper carries out a study on the Matching Error (ME), a comparison index of two partitions obtained from the same data set, using for example two clustering methods. This index…

统计方法学 · 统计学 2019-07-31 Mathias Bourel , Badih Ghattas , Meliza González

Recently, Andrews and El Bachraoui considered the number of integer partitions whose smallest part is repeated exactly $k$ times and the remaining parts are not repeated. They presented several interesting results and posed questions…

组合数学 · 数学 2025-05-15 Dandan Chen , Rong Chen , Mengjie Zhao

The $k^2$-tree is a compact data structure designed to efficiently store sparse binary matrices by leveraging both sparsity and clustering of nonzero elements. This representation supports efficiently navigational operations and complex…

数据结构与算法 · 计算机科学 2025-05-19 Gabriel Carmona , Giovanni Manzini

Multiple hypothesis testing is widely used to evaluate scientific studies involving statistical tests. However, for many of these tests, p-values are not available and are thus often approximated using Monte Carlo tests such as permutation…

应用统计 · 统计学 2018-10-17 Axel Gandy , Georg Hahn