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We propose an algorithm grounded in dynamical systems theory that generalizes manifold learning from a global state representation, to a network of local interacting manifolds termed a Generative Manifold Network (GMN). Manifolds are…

Research in modern data-driven dynamical systems is typically focused on the three key challenges of high dimensionality, unknown dynamics, and nonlinearity. The dynamic mode decomposition (DMD) has emerged as a cornerstone for modeling…

流体动力学 · 物理学 2022-04-27 Peter J. Baddoo , Benjamin Herrmann , Beverley J. McKeon , Steven L. Brunton

Thanks to novel, powerful brain activity recording techniques, we can create data-driven models from thousands of recording channels and large portions of the cortex, which can improve our understanding of brain-states neuromodulation and…

Decomposing multivariate time series with certain basic dynamics is crucial for understanding, predicting and controlling nonlinear spatiotemporally dynamic systems such as the brain. Dynamic mode decomposition (DMD) is a method for…

信号处理 · 电气工程与系统科学 2025-07-15 Ryohei Fukuma , Yoshinobu Kawahara , Okito Yamashita , Kei Majima , Haruhiko Kishima , Takufumi Yanagisawa

C. elegans locomotion is composed of switches between forward and reversal states punctuated by turns. This locomotory capability is necessary for the nematode to move towards attractive stimuli, escape noxious chemicals, and explore its…

神经元与认知 · 定量生物学 2025-01-03 Megan Morrison , Lai-Sang Young

We study the ability of neural networks to calculate feedback control signals that steer trajectories of continuous time non-linear dynamical systems on graphs, which we represent with neural ordinary differential equations (neural ODEs).…

机器学习 · 计算机科学 2022-06-22 Thomas Asikis , Lucas Böttcher , Nino Antulov-Fantulin

A critical challenge in the data-driven modeling of dynamical systems is producing methods robust to measurement error, particularly when data is limited. Many leading methods either rely on denoising prior to learning or on access to large…

数值分析 · 数学 2019-09-04 Samuel H. Rudy , J. Nathan Kutz , Steven L. Brunton

Unsupervised learning methods have a soft inspiration in cognition models. To this day, the most successful unsupervised learning methods revolve around clustering samples in a mathematical space. In this paper we propose a primitive-based,…

人工智能 · 计算机科学 2025-07-04 Alfredo Ibias , Hector Antona , Guillem Ramirez-Miranda , Enric Guinovart , Eduard Alarcon

Neural manifolds summarize the intrinsic structure of the information encoded by a population of neurons. Advances in experimental techniques have made simultaneous recordings from multiple brain regions increasingly commonplace, raising…

神经元与认知 · 定量生物学 2025-03-27 Iris H. R. Yoon , Gregory Henselman-Petrusek , Yiyi Yu , Robert Ghrist , Spencer LaVere Smith , Chad Giusti

Molecular communication (MC) enables cooperation of spatially dispersed molecular robots through the feedback control mediated by diffusing signal molecules. However, conventional analysis frameworks for the MC channels mostly consider the…

系统与控制 · 电气工程与系统科学 2025-08-11 Taishi Kotsuka , Yutaka Hori

Brain-computer interfaces (BCIs) have enabled prosthetic device control by decoding motor movements from neural activities. Neural signals recorded from cortex exhibit nonstationary property due to abrupt noises and neuroplastic changes in…

信号处理 · 电气工程与系统科学 2019-11-05 Yu Qi , Bin Liu , Yueming Wang , Gang Pan

In real-world clinical practice, overlooking unanticipated findings can result in serious consequences. However, supervised learning, which is the foundation for the current success of deep learning, only encourages models to identify…

Effectively learning the temporal dynamics in electroencephalogram (EEG) signals is challenging yet essential for decoding brain activities using brain-computer interfaces (BCIs). Although Transformers are popular for their long-term…

信号处理 · 电气工程与系统科学 2024-10-30 Yi Ding , Yong Li , Hao Sun , Rui Liu , Chengxuan Tong , Chenyu Liu , Xinliang Zhou , Cuntai Guan

Decoding approaches are widely used in neuroscience and machine learning to compare stimulus representations across neural systems, such as different brain regions, organisms, and deep learning models. Popular methods include decoding…

神经元与认知 · 定量生物学 2026-05-08 Johannes Bertram , Luciano Dyballa , T. Anderson Keller , Savik Kinger , Steven W. Zucker

Control is essential to the functioning of any neural system. Indeed, under healthy conditions the brain must be able to continuously maintain a tight functional control between the system's inputs and outputs. One may therefore hypothesise…

This paper focuses on analysis and design of time-varying complex networks having fractional order dynamics. These systems are key in modeling the complex dynamical processes arising in several natural and man made systems. Notably,…

信号处理 · 电气工程与系统科学 2018-09-17 Gaurav Gupta , Sergio Pequito , Paul Bogdan

Dynamic Causal Modeling (DCM) is a Bayesian framework for inferring on hidden (latent) neuronal states, based on measurements of brain activity. Since its introduction in 2003 for functional magnetic resonance imaging data, DCM has been…

定量方法 · 定量生物学 2021-04-08 Inês Pereira , Stefan Frässle , Jakob Heinzle , Dario Schöbi , Cao Tri Do , Moritz Gruber , Klaas E. Stephan

Recent developments in experimental neuroscience make it possible to simultaneously record the activity of thousands of neurons. However, the development of analysis approaches for such large-scale neural recordings have been slower than…

神经元与认知 · 定量生物学 2022-10-18 Rufus Mitchell-Heggs , Seigfred Prado , Giuseppe P. Gava , Mary Ann Go , Simon R. Schultz

Analyzing signals arising from dynamical systems typically requires many modeling assumptions and parameter estimation. In high dimensions, this modeling is particularly difficult due to the "curse of dimensionality". In this paper, we…

系统与控制 · 计算机科学 2016-12-21 Tal Shnitzer , Ronen Talmon , Jean-Jacques Slotine

Our ability to use deep learning approaches to decipher neural activity would likely benefit from greater scale, in terms of both model size and datasets. However, the integration of many neural recordings into one unified model is…