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Measuring gene expression simultaneously in both hosts and symbionts offers a powerful approach to explore the biology underlying species interactions. Such dual or simultaneous RNAseq approaches have primarily been used to gain insight…

种群与进化 · 定量生物学 2022-06-28 Amanda K Hund , Peter Tiffin , Jean-Gabriel Young , Daniel I Bolnick

Ecology and evolution are inseparable. Motivated by some recent experiments, we have developed models of evolutionary ecology from the perspective of dynamic networks. In these models, in addition to the intra-node dynamics, which…

种群与进化 · 定量生物学 2009-11-10 Debashish Chowdhury , Dietrich Stauffer

Despite the common misconception of nearly static organisms, plants do interact continuously with the environment and with each other. It is fair to assume that during their evolution they developed particular features to overcome problems…

种群与进化 · 定量生物学 2016-02-19 Gianna Vivaldo , Elisa Masi , Camilla Pandolfi , Stefano Mancuso , Guido Caldarelli

Biological organisms adapt to changes by processing informations from different sources, most notably from their ancestors and from their environment. We review an approach to quantify these informations by analyzing mathematical models of…

种群与进化 · 定量生物学 2016-03-23 Olivier Rivoire

One strategy for winning a coevolutionary struggle is to evolve rapidly. Most of the literature on host-pathogen coevolution focuses on this phenomenon, and looks for consequent evidence of coevolutionary arms races. An alternative…

种群与进化 · 定量生物学 2012-11-14 Erick Chastain , Rustom Antia , Carl T. Bergstrom

Inclusion of high throughput technologies in the field of biology has generated massive amounts of biological data in the recent years. Now, transforming these huge volumes of data into knowledge is the primary challenge in computational…

机器学习 · 计算机科学 2021-12-06 Dibyendu Ghosh , Srija Chakraborty , Hariprasad Kodamana , Supriya Chakraborty

Why are living systems complex? Why does the biosphere contain living beings with complexity features beyond those of the simplest replicators? What kind of evolutionary pressures result in more complex life forms? These are key questions…

种群与进化 · 定量生物学 2023-11-13 Seoane LF , Solé R

We delve into the interactions between a prey-predator and a vector-borne epidemic system, driven by agro-ecological motivations. This system involves an ODE, two reaction--diffusion PDEs and one reaction--diffusion--advection PDE. It has…

偏微分方程分析 · 数学 2024-02-13 Baptiste Maucourt

The ladybird $\textit{Eriopis connexa}$ (Germar, 1824), a voracious aphid predator, faces challenges from insecticide applications, compromising biological control. As a result, there has been an increase in the number of studies analysing…

The problem of evolutionary complexification of life is considered one of the fundamental aspects in contemporary evolutionary theory. Parasitism is ubiquitous, inevitable, and arises as soon as the first replicators appear, even during the…

分子网络 · 定量生物学 2024-01-01 Alexander Spirov

The coupling between evolutionary and ecological changes (eco-evolutionary dynamics) has been shown to be relevant among diverse species, and is also of interest outside of ecology, i.e. in cancer evolution. These dynamics play an important…

偏微分方程分析 · 数学 2026-01-21 Manh Hong Duong , Fabian Spill , Blaine van Rensburg

We discuss a simple model of co-evolution. In order to emphasise the effect of interaction between individuals the entire population is subjected to the same physical environment. Species are emergent structures and extinction, origination…

统计力学 · 物理学 2007-05-23 Kim Christensen , Simone A. di Collobiano , Matt Hall , Henrik J. Jensen

Fluid dynamics, and flight in particular, is a domain where organisms challenge our understanding of its physics. Integrating the current knowledge of animal flight, we propose to revisit the use of live animals to study physical phenomena.…

流体动力学 · 物理学 2024-09-17 Ariane Gayout , David Lentink

Agricultural losses to pest represent an important challenge in a global warming scenario. Intercropping is an alternative farming practice that promotes pest control without the use of chemical pesticides. Here we develop a mathematical…

种群与进化 · 定量生物学 2019-09-11 Alfonso Allen-Perkins , Ernesto Estrada

Trap cropping is a pest management strategy where a grower plants an attractive "trap crop" alongside the primary crop to divert pests away from it. We propose a simple framework for optimizing the proportion of a grower's field or…

种群与进化 · 定量生物学 2025-08-11 Matthew H Holden

The architecture of bipartite networks linking two classes of constituents is affected by the interactions within each class. For the bipartite networks representing the mutualistic relationship between pollinating animals and plants, it…

种群与进化 · 定量生物学 2012-03-13 Seong Eun Maeng , Jae Woo Lee , Deok-Sun Lee

Additional food sources for an introduced predator are known to increase its efficiency on a target pest. In this context, inhibiting factors such as interference, predator competition, and the introduction of temporally dependent quantity…

种群与进化 · 定量生物学 2025-10-08 Urvashi Verma , Kanishka Goyal , Chanaka Kottegoda , Rana D. Parshad

Insect pests recognition is necessary for crop protection in many areas of the world. In this paper we propose an automatic classifier based on the fusion between saliency methods and convolutional neural networks. Saliency methods are…

计算机视觉与模式识别 · 计算机科学 2020-10-01 Loris Nanni , Gianluca Maguolo , Fabio Pancino

Joint species distribution models are popular in ecology for modeling covariate effects on species occurrence, while characterizing cross-species dependence. Data consist of multivariate binary indicators of the occurrences of different…

统计方法学 · 统计学 2025-07-08 Federica Stolf , David B. Dunson

Cooperation and competition between pathogens can alter the amount of individuals affected by a co-infection. Nonetheless, the evolution of the pathogens' behavior has been overlooked. Here, we consider a co-evolutionary model where the…

种群与进化 · 定量生物学 2022-03-23 Fakhteh Ghanbarnejad , Kai Seegers , Alessio Cardillo , Philipp Hövel