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We propose a minimal model for spherical proteins with aeolotopic pair interactions to describe the equilibrium phase behavior of lysozyme. The repulsive screened Coulomb interactions between the particles are taken into account assuming…

Effect of confinement on the liquid-liquid transition of water are studied by simulations in the Gibbs ensemble. Upon cooling along the liquid-vapor coexistence curve, confined water undergoes transition from normal to strongly tetrahedral…

软凝聚态物质 · 物理学 2007-05-23 Ivan Brovchenko , Alla Oleinikova

Intermolecular interactions in protein solutions in general contain many contributions. If short-range attractions dominate, the state diagram exhibits liquid-liquid phase separation (LLPS) that is metastable with respect to…

The phase behavior is investigated for systems composed of a large number of macromolecular components N, with N greater or equal to 2. Liquid-liquid phase separation is modelled using a virial expansion up to the second order of the…

软凝聚态物质 · 物理学 2024-05-29 Arjen Bot , Erik van der Linden , Paul Venema

The liquid-gas transition of an electroneutral mixture of oppositely charged colloids, studied by Monte Carlo simulations, is found in the low temperature -- low density region. The critical temperature shows a non-monotonous behavior as a…

Mixtures of glass-forming fluids sometimes exhibit glass-glass phase separation at low temperatures. Here, we use a molecular dynamics simulation to study one of the simplest examples of the glass-glass phase separation. We consider a…

统计力学 · 物理学 2020-04-07 Yuri Oku , Kyohei Takae , Atsushi Ikeda

Image processing and pattern recognition offer a useful and versatile method for optically characterizing drops of a colloidal solution during the drying process and in its final state. This paper exploits image processing techniques…

软凝聚态物质 · 物理学 2020-02-11 Anusuya Pal , Amalesh Gope , Germano S. Iannacchione

We propose a continuum theory of the liquid-liquid phase separation in an elastic network where phase-separated microscopic droplets rich in one fluid component can form as an interplay of fluids mixing, droplet nucleation, network…

软凝聚态物质 · 物理学 2021-01-04 Xuefeng Wei , Jiajia Zhou , Yanting Wang , Fanlong Meng

All liquids (except helium due to quantum effects) crystallize at low temperatures, forming ordered structures. The competition between disorder, which stabilizes the liquid phase, and energy, which favors the ordered crystalline structure,…

软凝聚态物质 · 物理学 2013-07-09 Frank Smallenburg , Francesco Sciortino

The behavior of the diameter of the coexistence curve in terms of the entropy and the corresponding diameter are investigated. It is shown that the diameter of the coexistence curve in term of the entropy is sensitive to the change in the…

统计力学 · 物理学 2013-04-26 L. A. Bulavin , V. L. Kulinskii , N. P. Malomuzh

We perform extensive numerical simulations of a paradigmatic model glass former, the hard-sphere fluid with 10% polydispersity. We sample from the ensemble of trajectories with fixed observation time, whereby single trajectories are…

统计力学 · 物理学 2020-01-28 Matteo Campo , Thomas Speck

Protein-protein interactions (protein functionalities) are mediated by water, which compacts individual proteins and promotes close and temporarily stable large-area protein-protein interfaces. Proteins are peptide chains decorated by amino…

软凝聚态物质 · 物理学 2008-02-26 J. C. Phillips

Biomolecular condensates are formed via liquid-liquid phase separation of proteins, often together with nucleic acids, typically driven by interactions between low-affinity binding sites. The computational study of such condensates that…

软凝聚态物质 · 物理学 2025-01-16 Alena Taskina , Devika Magan , Simon Dannenberg , Stefan Klumpp

We propose that the concept of liquids characterized by a given locally preferred structure (LPS) could help in understanding the observed phenomenon of polyamorphism. ``True polyamorphism'' would involve the competition between two (or…

统计力学 · 物理学 2009-11-07 G. Tarjus , C. Alba-Simionesco , M. Grousson , P. Viot , D. Kivelson

The study of liquid-liquid phase transition has attracted considerable attention. One interesting example of such phenomenon is phosphorus for which the existence a first-order phase transition between a low density insulating molecular…

软凝聚态物质 · 物理学 2021-08-25 Manyi Yang , Tarak Karmakar , Michele Parrinello

A thermodynamic model for a mixture of alkanethiol-coated nanoparticles (NPs) and low molecular weight (non-polymeric) solvent is developed, and calculations of liquid-liquid phase equilibrium for different values of NP core radius,…

材料科学 · 物理学 2013-11-22 Ezequiel R. Soule , Cristina E. Hoppe , Julio Borrajo , Roberto J. J. Williams

We investigate the behavior of colloidal suspensions with different volume fractions confined between parallel walls under a range of steady shears. We model the particles using molecular dynamics (MD) with full hydrodynamic interactions…

软凝聚态物质 · 物理学 2014-09-18 Frances E. Mackay , Kyle Pastor , Mikko Karttunen , Colin Denniston

In this work we examine thermodynamics of fluid with "molecules" represented by two fused hard spheres, decorated by the attractive square-well sites. Interactions between these sites are of short-range and cause association between the…

软凝聚态物质 · 物理学 2016-03-24 M. Kastelic , Yu. V. Kalyuzhnyi , V. Vlachy

Water is a ubiquitous liquid with unique physico-chemical properties, whose nature has shaped our planet and life as we know it. Water in restricted geometries has different properties than in bulk. Confinement can prevent low-temperature…

We study model protein solutions and colloidal suspensions in the temperature range whereupon the nature of the system changes from a homogeneous fluid to a "cluster fluid". It is commonly assumed - as deduced by the behavior of the…

统计力学 · 物理学 2011-09-02 Jean-Marc Bomont , Jean-Louis Bretonnet , Dino Costa