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The need to harmonise apparently irreconcilable arrangements in an ecosystem --nestedness and segregation-- has triggered so far different strategies. Methodological refinements, or the inclusion of behavioural preferences to the network…

Link prediction in complex networks has attracted increasing attention from both physical and computer science communities. The algorithms can be used to extract missing information, identify spurious interactions, evaluate network evolving…

物理与社会 · 物理学 2015-05-20 Linyuan Lu , Tao Zhou

Bipartite networks are widely used to encode the ecological interactions. Being able to compare the organization of bipartite networks is a first step toward a better understanding of how environmental factors shape community structure and…

机器学习 · 统计学 2025-12-02 Louis Lacoste , Pierre Barbillon , Sophie Donnet

So far, many network-structure-based link prediction methods have been proposed. However, these methods only highlight one or two structural features of networks, and then use the methods to predict missing links in different networks. The…

物理与社会 · 物理学 2017-09-01 Chuang Ma , Zhong-Kui Bao , Hai-Feng Zhang

Link prediction problem has increasingly become prominent in many domains such as social network analyses, bioinformatics experiments, transportation networks, criminal investigations and so forth. A variety of techniques has been developed…

人工智能 · 计算机科学 2023-05-18 Safiye Ghasemi , Amin Zarei

Link prediction plays an important role in network analysis and applications. Recently, approaches for link prediction have evolved from traditional similarity-based algorithms into embedding-based algorithms. However, most existing…

社会与信息网络 · 计算机科学 2020-08-11 Lei Wang , Jing Ren , Bo Xu , Jianxin Li , Wei Luo , Feng Xia

As a fundamental problem in many different fields, link prediction aims to estimate the likelihood of an existing link between two nodes based on the observed information. Since this problem is related to many applications ranging from…

物理与社会 · 物理学 2014-10-01 Hao Liao , An Zeng , Yi-Cheng Zhang

Link prediction is one of the fundamental problems in computational social science. A particularly common means to predict existence of unobserved links is via structural similarity metrics, such as the number of common neighbors; node…

社会与信息网络 · 计算机科学 2019-01-01 Kai Zhou , Tomasz P. Michalak , Talal Rahwan , Marcin Waniek , Yevgeniy Vorobeychik

Ecological networks describe the interactions between different species, informing us of how they rely on one another for food, pollination and survival. If a species in an ecosystem is under threat of extinction, it can affect other…

种群与进化 · 定量生物学 2023-07-06 Chris Jones , Damaris Zurell , Karoline Wiesner

Real-world network datasets are typically obtained in ways that fail to capture all edges. The patterns of missing data are often non-uniform as they reflect biases and other shortcomings of different data collection methods. Nevertheless,…

动力系统 · 数学 2025-04-25 Xie He , Amir Ghasemian , Eun Lee , Alice Schwarze , Aaron Clauset , Peter J. Mucha

Missing link prediction is a method for network analysis, with applications in recommender systems, biology, social sciences, cybersecurity, information retrieval, and Artificial Intelligence (AI) reasoning in Knowledge Graphs. Missing link…

Relational data are ubiquitous in real-world data applications, e.g., in social network analysis or biological modeling, but networks are nearly always incompletely observed. The state-of-the-art for predicting missing links in the hard…

机器学习 · 计算机科学 2025-08-13 Bisman Singh , Lucy Van Kleunen , Aaron Clauset

Nowadays online users prefer to join multiple social media for the purpose of socialized online service. The problem \textit{anchor link prediction} is formalized to link user data with the common ground on user profile, content and network…

社会与信息网络 · 计算机科学 2021-03-22 Hao Gao , Yongqing Wang , Shanshan Lyu , Huawei Shen , Xueqi Cheng

Scientific studies in many areas of biology routinely employ evolutionary analyses based on the probabilistic inference of phylogenetic trees from molecular sequence data. Evolutionary processes that act at the molecular level are highly…

种群与进化 · 定量生物学 2024-12-10 Mandev S. Gill , Guy Baele , Marc A. Suchard , Philippe Lemey

Hierarchical forecasting problems arise when time series have a natural group structure, and predictions at multiple levels of aggregation and disaggregation across the groups are needed. In such problems, it is often desired to satisfy the…

机器学习 · 计算机科学 2023-04-12 Kin G. Olivares , O. Nganba Meetei , Ruijun Ma , Rohan Reddy , Mengfei Cao , Lee Dicker

Link prediction infers potential links from observed networks, and is one of the essential problems in network analyses. In contrast to traditional graph representation modeling which only predicts two-way pairwise relations, we propose a…

社会与信息网络 · 计算机科学 2021-11-10 Yubai Yuan , Annie Qu

We propose a novel and efficient method for link prediction in bipartite networks, using \textit{formal concept analysis} (FCA) and the Transformer encoder. Link prediction in bipartite networks finds practical applications in various…

机器学习 · 计算机科学 2025-03-21 Hongyuan Yang , Siqi Peng , Akihiro Yamamoto

Link prediction, the problem of identifying missing links among a set of inter-related data entities, is a popular field of research due to its application to graph-like domains. Producing consistent evaluations of the performance of the…

社会与信息网络 · 计算机科学 2016-11-28 Dario Garcia-Gasulla , Eduard Ayguadé , Jesús Labarta , Ulises Cortés

Link prediction is an elemental challenge in network science, which has already found applications in guiding laboratorial experiments, digging out drug targets, recommending friends in social networks, probing mechanisms in network…

物理与社会 · 物理学 2019-06-26 Ratha Pech , Dong Hao , Yan-Li Lee , Ye Yuan , Tao Zhou

Poisson non-negative matrix factorization (NMF) is a widely used method to find interpretable "parts-based" decompositions of count data. While many variants of Poisson NMF exist, existing methods assume that the "parts" in the…

机器学习 · 计算机科学 2026-01-12 Eric Weine , Peter Carbonetto , Rafael A. Irizarry , Matthew Stephens