相关论文: RAMBO: Repeated And Merged BloOm Filter for Ultra-…

Minimum Spanning Tree (MST) is an important graph algorithm that has wide ranging applications in the areas of computer networks, VLSI routing, wireless communications among others. Today virtually every computer is built out of multi-core…

This paper describes a new asynchronous algorithm and implementation for the problem of k-mer counting (KC), which concerns quantifying the frequency of length k substrings in a DNA sequence. This operation is common to many computational…

Parallel applications can spend a significant amount of time performing I/O on large-scale supercomputers. Fast near-compute storage accelerators called burst buffers can reduce the time a processor spends performing I/O and mitigate I/O…

We introduce BOURBON, a log-structured merge (LSM) tree that utilizes machine learning to provide fast lookups. We base the design and implementation of BOURBON on empirically-grounded principles that we derive through careful analysis of…

Distributed approaches based on the map-reduce programming paradigm have started to be proposed in the bioinformatics domain, due to the large amount of data produced by the next-generation sequencing techniques. However, the use of…

With the advent of Next-Generation (NG) sequencing, it has become possible to sequence an entire genome quickly and inexpensively. However, in some experiments one only needs to extract and assembly a portion of the sequence reads, for…

The problem of task scheduling with communication delays is strongly NP-hard. State-space search algorithms such as A* have been shown to be a promising approach to solving small to medium sized instances optimally. A recently proposed…

Reasoning LLMs (RLMs) such as OpenAI o1, DeepSeek-R1, and Qwen3 deliver strong multi-step reasoning through chain-of-thought generation, but their large model sizes and lengthy decode-time outputs make them costly to deploy and unsuitable…

Quantitative susceptibility mapping (QSM) involves acquisition and reconstruction of a series of images at multi-echo time points to estimate tissue field, which prolongs scan time and requires specific reconstruction technique. In this…

In this paper, we first propose a new iterative algorithm, called the K-sets+ algorithm for clustering data points in a semi-metric space, where the distance measure does not necessarily satisfy the triangular inequality. We show that the…

Industrial multi-label document understanding pipelines score candidate labels and threshold or rank them to form a label set per document. This early selection step directly affects the accuracy of downstream information extraction from…

We consider online algorithms for the $k$-server problem on trees. Chrobak and Larmore proposed a $k$-competitive algorithm for this problem that has the optimal competitive ratio. However, a naive implementation of their algorithm has…

Most real-world networks evolve over time. Existing literature proposes models for dynamic networks that are either unlabeled or assumed to have a single membership structure. On the other hand, a new family of Mixed Membership Stochastic…

Despite recent progress in constructing generalizable parallel algorithm portfolios (PAPs), no general-purpose approach is yet available for multi-objective binary optimization problems (MOBOPs). To fill this gap, this paper proposes…

Quantum Machine Learning (QML) models of molecular HOMO-LUMO-gaps often struggle to achieve satisfying data-efficiency as measured by decreasing prediction errors for increasing training set sizes. Partitioning training sets of organic…

The continually increasing number of complex datasets each year necessitates ever improving machine learning methods for robust and accurate categorization of these data. This paper introduces Random Multimodel Deep Learning (RMDL): a new…

Hyperparameter tuning is one of the the most time-consuming parts in machine learning. Despite the existence of modern optimization algorithms that minimize the number of evaluations needed, evaluations of a single setting may still be…

Mesoscale IoT applications, such as P2P energy trade and real-time industrial control systems, demand high throughput and low latency, with a secondary emphasis on energy efficiency as they rely on grid power or large-capacity batteries.…

Calibrating statistical models using Bayesian inference often requires both accurate and timely estimates of parameters of interest. Particle Markov Chain Monte Carlo (p-MCMC) and Sequential Monte Carlo Squared (SMC$^2$) are two methods…

Multi-Objective Optimization (MOO) is very difficult for expensive functions because most current MOO methods rely on a large number of function evaluations to get an accurate solution. We address this problem with surrogate approximation…