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相关论文: Sequence design-based control of DNA droplets form…

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The liquid-liquid phase separation of biomolecules is an important process for intracellular organization. Biomolecular sequence combinatorics leads to a large variety of proteins and nucleic acids which can interact to form a diversity of…

软凝聚态物质 · 物理学 2025-08-27 Aria S. Chaderjian , Sam Wilken , Omar A. Saleh

Cells operate in part by compartmentalizing chemical reactions. For example, recent work has shown that chromatin, the material that contains the cell's genome, can auto-regulate its structure by utilizing reaction products (proteins, RNA)…

软凝聚态物质 · 物理学 2024-10-30 Sam Wilken , Gabrielle R. Abraham , Omar A. Saleh

Many recent studies of liquid-liquid phase separation in biology focus on phase separation as a dynamic control mechanism for cellular function, but it can also result in complex mesoscopic structures. We primarily investigate a model…

软凝聚态物质 · 物理学 2023-07-11 Sam Wilken , Aria Chaderjian , Omar A. Saleh

DNA-coated colloids can crystallize into a multitude of lattices, ranging from face-centered cubic to diamond and thereby contribute to our understanding of crystallization and open avenues to producing structures with useful photonic…

软凝聚态物质 · 物理学 2026-04-17 Pepijn G. Moerman , Huang Fang , Thomas E. Videbæk , W. Benjamin Rogers , Rebecca Schulman

The precise control of liquid-liquid phase separation (LLPS) is the key to developing cutting-edge technologies that benefit diverse disciplines. Fluid flow was found to be capable of controlling the structure and effective temperature of…

流体动力学 · 物理学 2024-07-04 Yulin Li , Tong Zhou , Yanyu Li , Qi Zhang , Zhihong You

The specificity and thermal reversibility of DNA interactions have enabled the self-assembly of crystal structures, self-replicating materials and colloidal molecules. Grafting DNA onto liquid interfaces of emulsions leads to exciting new…

软凝聚态物质 · 物理学 2013-10-31 Lang Feng , Lea-Laetitia Pontani , Remi Dreyfus , Paul Chaikin , Jasna Brujic

Just like atoms combine into molecules, colloids can self-organize into predetermined structures according to a set of design principles. Controlling valence -- the number of inter-particle bonds -- is a prerequisite for the assembly of…

软凝聚态物质 · 物理学 2022-01-05 Angus McMullen , Sascha Hilgenfeldt , Jasna Brujic

The formation of DNA loops by proteins and protein complexes that bind at distal DNA sites plays a central role in many cellular processes, such as transcription, recombination, and replication. Here we review the basic thermodynamic…

分子网络 · 定量生物学 2007-05-23 Jose M. G. Vilar , Leonor Saiz

Technologies for sequencing (reading) and synthesizing (writing) DNA have progressed on a Moore's law-like trajectory over the last three decades. This has motivated the idea of using DNA for data storage. Theoretically, DNA-based storage…

Living and engineered systems rely on the stable coexistence of two interspersed liquid phases. Yet surface tension drives their complete separation. Here we show that stable droplets of uniform and tuneable size can be produced through…

Biomolecular condensates form on timescales of seconds in cells upon environmental or compositional changes. Condensate formation is thus argued to act as a mechanism for sensing such changes and quickly initiating downstream processes,…

亚细胞过程 · 定量生物学 2025-12-09 Henry Alston , Mason Rouches , Arvind Murugan , Aleksandra M. Walczak , Thierry Mora

The proper design of DNA sequences allows for the formation of well defined supramolecular units with controlled interactions via a consecution of self-assembling processes. Here, we benefit from the controlled DNA self-assembly to…

软凝聚态物质 · 物理学 2018-02-14 Javier Fernandez-Castanon , Francesca Bomboi , Francesco Sciortino

The process of DNA-based data storage (DNA storage for short) can be mathematically modelled as a communication channel, termed DNA storage channel, whose inputs and outputs are sets of unordered sequences. To design error correcting codes…

信息论 · 计算机科学 2020-06-11 Wentu Song , Kui Cai , Kees A. Schouhamer Immink

Lasers based on biological materials are attracting an increasing interest in view of their use in integrated and transient photonics. DNA as optical biopolymer in combination with highly-emissive dyes has been reported to have excellent…

We propose a new strategy to improve the self-assembly properties of DNA-functionalised colloids. The problem that we address is that DNA-functionalised colloids typically crystallize in a narrow temperature window, if at all. The…

软凝聚态物质 · 物理学 2013-01-22 B. M. Mognetti , M. E. Leunissen , D. Frenkel

In equilibrium self-assembly, microscopic building blocks spontaneously self-organize into stable structures as dictated by their interaction potentials, which limits the accessible structural features to those that correspond to global…

软凝聚态物质 · 物理学 2026-04-17 Pepijn G. Moerman , Chenghung Chou , Thomas E. Videbæk , W. Benjamin Rogers , Rebecca Schulman

We introduce a sequence-dependent parametrization for a coarse-grained DNA model [T. E. Ouldridge, A. A. Louis, and J. P. K. Doye, J. Chem. Phys. 134, 085101 (2011)] originally designed to reproduce the properties of DNA molecules with…

We report the existence of self-propelled Janus droplets driven by phase separation, which are able to deliver cargo in a programmable manner. The self-propelling droplets are initially formed by a water/ethanol mixture in a…

软凝聚态物质 · 物理学 2016-12-26 Menglin Li , Martin Brinkmann , Ignacio Pagonabarraga , Ralf Seemann , Jean-Baptiste Fleury

DNA is not only the genetic material of life, but also a favorable material for a new computing model. Various research works based on DNA computing have been carried out in recent years. DNA sequence design is the foundation of such…

新兴技术 · 计算机科学 2023-11-10 Yao Yao , Xun Zhang , Xin Liu , Yuan Liu , Xiaokang Zhang , Qiang Zhang

Demixing of multicomponent biomolecular systems via liquid-liquid phase separation (LLPS) has emerged as a potentially unifying mechanism governing the formation of several membrane-less intracellular organelles ("condensates"), both in the…

软凝聚态物质 · 物理学 2022-10-04 Pierre Ronceray , Sheng Mao , Andrej Košmrlj , Mikko P. Haataja
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