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相关论文: Enhanced Diffusion and Chemotaxis of Enzymes

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Enzymes have been recently proposed to have mechanical activity associated with their chemical activity. In a number of recent studies, it has been reported that enzymes undergo enhanced diffusion in the presence of their corresponding…

生物物理 · 物理学 2021-04-07 Jaime Agudo-Canalejo , Tunrayo Adeleke-Larodo , Pierre Illien , Ramin Golestanian

Enzymes show two distinct transport behaviors in the presence of their substrates in solution. First, their diffusivity enhances with increasing substrate concentration. In addition, enzymes perform directional motion toward regions with…

生物物理 · 物理学 2018-11-06 Farzad Mohajerani , Xi Zhao , Ambika Somasundar , Darrell Velegol , Ayusman Sen

Chemotaxis of enzymes in response to gradients in the concentration of their substrate has been widely reported in recent experiments, but a basic understanding of the process is still lacking. Here, we develop a microscopic theory for…

生物物理 · 物理学 2021-04-07 Jaime Agudo-Canalejo , Pierre Illien , Ramin Golestanian

Many experiments in recent years have reported that, when exposed to their corresponding substrate, catalytic enzymes undergo enhanced diffusion as well as chemotaxis (biased motion in the direction of a substrate gradient). Among other…

软凝聚态物质 · 物理学 2020-11-17 Jaime Agudo-Canalejo , Ramin Golestanian

Enhanced diffusion and anti-chemotaxis of enzymes have been reported in several experiments in the last decade, opening up entirely new avenues of research in the bio-nanosciences both at the applied and fundamental level. Here, we…

统计力学 · 物理学 2020-07-29 Daniel Maria Busiello , Paolo De Los Rios , Francesco Piazza

Enzymes have been recently found to exhibit enhanced diffusion due to their catalytic activities. A recent experiment [C. Riedel et al., Nature 517, 227 (2015)] has found evidence that suggests this phenomenon might be controlled by the…

生物大分子 · 定量生物学 2015-09-30 Ramin Golestanian

Recent experiments have revealed that the diffusivity of exothermic and fast enzymes is enhanced when they are catalytically active, and different physical mechanisms have been explored and quantified to account for this observation. We…

生物物理 · 物理学 2017-08-02 Pierre Illien , Xi Zhao , Krishna K. Dey , Peter J. Butler , Ayusman Sen , Ramin Golestanian

The concept that catalytic enzymes can act as molecular machines transducing chemical activity into motion has conceptual and experimental support, but much of the claimed support comes from experimental conditions where the substrate…

软凝聚态物质 · 物理学 2020-02-04 Ah-Young Jee , Kuo Chen , Tsvi Tlusty , Jiang Zhao , Steve Granick

Several enzymes exhibit enhanced diffusion in the presence of a substrate. One explanation of this enhancement arises from fluctuating dimer models, which suggest that enzymes have a higher diffusion constant when interacting with…

软凝聚态物质 · 物理学 2024-05-14 Amit Singh Vishen , Jacques Prost , Madan Rao

Catalytically active enzymes have recently been observed to exhibit enhanced diffusion. In a recent work [C. Riedel et al., Nature 517, 227 (2015)], it has been suggested that this phenomenon is correlated with the degree of exothermicity…

生物物理 · 物理学 2016-08-29 Ramin Golestanian

Several different enzymes display an apparent diffusion coefficient that increases with the concentration of their substrate. Moreover, their motion becomes directed in substrate gradients. Currently, there are several competing models for…

生物物理 · 物理学 2020-09-23 Giovanni Giunta , Hamid Seyed-Allaei , Ulrich Gerland

Recent experimental results have shown that active enzymes can diffuse faster when they are in the presence of their substrates. Fluorescence correlation spectroscopy (FCS), which relies on analyzing the fluctuations in fluorescence…

亚细胞过程 · 定量生物学 2019-09-25 Mengqi Xu , Lyanne Valdez , Aysuman Sen , Jennifer L. Ross

Enzyme-enriched condensates can organize the spatial distribution of their substrates by catalyzing non-equilibrium reactions. Conversely, an inhomogeneous substrate distribution induces enzyme fluxes through substrate-enzyme interactions.…

生物物理 · 物理学 2023-03-29 Leonardo Demarchi , Andriy Goychuk , Ivan Maryshev , Erwin Frey

Enzymes have been shown to diffuse faster in the presence of their reactants. Recently, we revealed new insights into this process of enhanced diffusion using single-particle tracking (SPT) with total internal reflection fluorescence (TIRF)…

生物物理 · 物理学 2021-01-01 Mengqi Xu , W. Benjamin Rogers , Wylie W. Ahmed , Jennifer L. Ross

Molecular agitation more rapid than thermal Brownian motion is reported for cellular environments, motor proteins, synthetic molecular motors, enzymes, and common chemical reactions, yet that chemical activity couples to molecular motion…

软凝聚态物质 · 物理学 2022-06-08 Ah-Young Jee , Tsvi Tlusty , Steve Granick

Living systems contain intricate biochemical networks whose structure is closely related to their function and allows them to exhibit robust behavior in the presence of external stimuli. Such networks typically involve catalytic enzymes,…

生物物理 · 物理学 2025-10-27 Vincent Ouazan-Reboul , Ramin Golestanian , Jaime Agudo-Canalejo

Enzyme-based systems have been shown to undergo directional motion in response to their substrate gradient. Here, we formulate a kinetic model to analyze the directional movement of an ensemble of protein molecules in response to a gradient…

生物物理 · 物理学 2021-03-26 Niladri Sekhar Mandal , Ayusman Sen

Single enzyme chemotaxis is a phenomenon by which a non-equilibrium spatial distribution of an enzyme is created and maintained by concentration gradients of the substrate and product of the catalyzed reaction. These gradients can arise…

软凝聚态物质 · 物理学 2022-06-14 Niladri Sekhar Mandal , Ayusman Sen , R. Dean Astumian

We investigated the energy transfer from active enzymes to their surroundings in crowded environments by measuring the diffusion of passive microscopic tracers in active solutions of ficoll and glycerol. Despite observing lower rates of…

Chemotaxis, the directional locomotion of cells towards a source of a chemical gradient, is an integral part of many biological processes - for example, bacteria motion, single-cell or multicellular organisms development, immune response,…

偏微分方程分析 · 数学 2021-03-29 Yishu Gong , Alexander Kiselev
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