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Unlike coffee and cream that homogenize when stirred, growing micro-organisms (e.g., bacteria, baker's yeast) can actively kill each other and avoid mixing. How do such antagonistic interactions impact the growth and survival of competing…

种群与进化 · 定量生物学 2025-04-01 Jonathan Bauermann , Roberto Benzi , David R. Nelson , Suraj Shankar , Federico Toschi

An organism that is newly introduced into an existing population has a survival probability that is dependent on both the population density of its environment and the competition it experiences with the members of that population.…

种群与进化 · 定量生物学 2024-12-17 Jason M. Gray , Rowan J. Barker-Clarke , Jacob G. Scott , Michael Hinczewski

The problem of natural selection in dispersal-structured populations consisting of individuals characterized by different diffusion coefficients is studied. The competition between the organisms is taken into account through the assumption…

适应与自组织系统 · 物理学 2020-05-01 E. Heinsalu , D. Navidad Maeso , M. Patriarca

We analyze evolutionary dynamics in a confluent, branching cellular population, such as in a growing duct, vasculature, or in a branching microbial colony. We focus on the coarse-grained features of the evolution and build a statistical…

种群与进化 · 定量生物学 2022-02-15 Adam S. Bryant , Maxim O. Lavrentovich

We extend the study of a model of competitive cluster growth in an active medium to a basis of networks; this is done by adding nonlocal connections with probability $p$ to sites on a regular lattice, thus enabling one to interpolate…

统计力学 · 物理学 2010-12-10 N. Nirmal Thyagu , Anita Mehta

Motivated by tumor growth and spatial population genetics, we study the interplay between evolutionary and spatial dynamics at the surfaces of three-dimensional, spherical range expansions. We consider range expansion radii that grow with…

种群与进化 · 定量生物学 2015-06-02 Maxim O. Lavrentovich , David R. Nelson

For most organisms with viscous population structure, spatially localized growth drives the invasive advance of a favorable mutation. We model a two-allele competition where recurrent mutation introduces a genotype with a rate of local…

种群与进化 · 定量生物学 2007-05-23 Lauren O'Malley , James Basham , Joseph A. Yasi , G. Korniss , Andrew Allstadt , Tom Caraco

Cellular renewing active matter - assemblies of proliferating and apoptotic cells - underlies tissue homeostasis, morphogenesis, and clonal competition. Previous work in one-dimensional periodic systems identified a fitness advantage…

软凝聚态物质 · 物理学 2025-12-02 Patrick Zimmer , Philip Bittihn , Yoav G. Pollack

Genetic drift at the frontiers of two-dimensional range expansions of microorganisms can frustrate local cooperation between different genetic variants, demixing the population into distinct sectors. In a biological context, mutualistic or…

种群与进化 · 定量生物学 2014-04-08 Maxim O. Lavrentovich , David R. Nelson

We study the genetic interfaces between two species of an expanding colony that consists of individual microorganisms that reproduce and undergo diffusion, both at the frontier and in the interior. Within the bulk of the colony, the genetic…

生物物理 · 物理学 2025-10-28 Jonathan Bauermann , David R. Nelson

Biological and social systems are structured at multiple scales, and the incentives of individuals who interact in a group may diverge from the collective incentive of the group as a whole. Mechanisms to resolve this tension are responsible…

种群与进化 · 定量生物学 2023-05-31 Daniel B. Cooney , Simon A. Levin , Yoichiro Mori , Joshua B. Plotkin

We review recent results obtained from simple individual-based models of biological competition in which birth and death rates of an organism depend on the presence of other competing organisms close to it. In addition the individuals…

种群与进化 · 定量生物学 2015-03-03 Emilio Hernandez-Garcia , Els Heinsalu , Cristobal Lopez

In a geographically distributed population, assortative clustering plays an important role in evolution by modifying local environments. To examine its effects in a linear habitat, we consider a one-dimensional grid of cells, where each…

种群与进化 · 定量生物学 2021-03-16 Sunhee Chae , Nahyeon Lee , Seung Ki Baek , Hyeong-Chai Jeong

How should dispersal strategies be chosen to increase the likelihood of survival of a species? We obtain the answer for the spatially extended versions of three well-known models of two competing species with unequal diffusivities. Though…

种群与进化 · 定量生物学 2020-07-08 Tapas Singha , Prasad Perlekar , Mustansir Barma

Synergistic and antagonistic interactions in multi-species populations - such as resource sharing and competition - result in remarkably diverse behaviors in populations of interacting cells, such as in soil or human microbiomes, or clonal…

种群与进化 · 定量生物学 2019-10-15 MattheW Badali , Anton Zilman

We introduce and analyse an individual-based evolutionary model, in which a population of genetically diverse organisms compete with each other for limited resources. Through theoretical analysis and stochastic simulations, we show that the…

种群与进化 · 定量生物学 2012-11-02 Tim Rogers , Alan J. McKane , Axel G. Rossberg

We investigate how initial and boundary conditions influence the competition dynamics and outcome in dispersal-structured populations. The study is carried out through numerical modeling of the heterogeneous Brownian bugs model, in which…

种群与进化 · 定量生物学 2022-04-27 D. Navidad Maeso , M. Patriarca , E. Heinsalu

The role of the selection pressure and mutation amplitude on the behavior of a single-species population evolving on a two-dimensional lattice, in a periodically changing environment, is studied both analytically and numerically. The…

种群与进化 · 定量生物学 2009-11-13 Ioana Bena , Michel Droz , Janusz Szwabinski , Andrzej Pekalski

The unwelcome evolution of malignancy during cancer progression emerges through a selection process in a complex heterogeneous population structure. In the present work, we investigate evolutionary dynamics in a phenotypically heterogeneous…

种群与进化 · 定量生物学 2018-02-07 Ali Mahdipour Shirayeh , Kamran Kaveh , Mohammad Kohandel , Siv Sivaloganathan

Individuals of different types, may it be genetic, cultural, or else, with different levels of fitness often compete for reproduction and survival. A fitter type generally has higher chances of disseminating their copies to other…

物理与社会 · 物理学 2009-04-24 Naoki Masuda
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