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Python is a popular dynamic programming language, evidenced by its ranking as the second most commonly used language on GitHub. However, its dynamic type system can lead to potential type errors, leading researchers to explore automatic…

Hosting over 10 million of software projects, GitHub is one of the most important data sources to study behavior of developers and software projects. However, with the increase of the size of open source datasets, the potential threats to…

Computational reproducibility is fundamental to scientific research, yet many published code supplements lack the necessary documentation to recreate their computational environments. While researchers increasingly share code alongside…

Data from software repositories have become an important foundation for the empirical study of software engineering processes. A recurring theme in the repository mining literature is the inference of developer networks capturing e.g.…

Stack Overflow (SO) has been a great source of natural language questions and their code solutions (i.e., question-code pairs), which are critical for many tasks including code retrieval and annotation. In most existing research,…

As coding agents are increasingly deployed in large codebases, the need to automatically design challenging, codebase-level evaluation is central. We propose Gistify, a task where a coding LLM must create a single, minimal, self-contained…

We introduce Repro, an open-source library which aims at improving the reproducibility and usability of research code. The library provides a lightweight Python API for running software released by researchers within Docker containers which…

We introduce DS-1000, a code generation benchmark with a thousand data science problems spanning seven Python libraries, such as NumPy and Pandas. Compared to prior works, DS-1000 incorporates three core features. First, our problems…

The drive for reproducibility in the computational sciences has provoked discussion and effort across a broad range of perspectives: technological, legislative/policy, education, and publishing. Discussion on these topics is not new, but…

Stack Overflow (SO) is the largest Q&A website for developers, providing a huge amount of copyable code snippets. Using these snippets raises various maintenance and legal issues. The SO license requires attribution, i.e., referencing the…

pyscreener is a Python library that seeks to alleviate the challenges of large-scale structure-based design using computational docking. It provides a simple and uniform interface that is agnostic to the backend docking engine with which to…

With the recent advancement of Artificial Intelligence (AI) and Large Language Models (LLMs), AI-based code generation tools become a practical solution for software development. GitHub Copilot, the AI pair programmer, utilizes machine…

Selecting third-party software packages in open-source ecosystems like Python is challenging due to the large number of alternatives and limited transparent evidence for comparison. Generative AI tools are increasingly used in development…

Python is widely used in the open-source community, largely owing to the extensive support from diverse third-party libraries within the PyPI ecosystem. Nevertheless, the utilization of third-party libraries can potentially lead to…

Applications are increasingly written as dynamic workflows underpinned by an execution framework that manages asynchronous computations across distributed hardware. However, execution frameworks typically offer one-size-fits-all solutions…

Mocking is a common unit testing technique that is used to simplify tests, reduce flakiness, and improve coverage by replacing real dependencies with simplified implementations. Despite its widespread use in Open Source Software projects,…

Python is a popular, widely used, and general-purpose programming language. In spite of its ever-growing community, researchers have not performed much analysis on Python's topics, trends, and technologies which provides insights for…

The field of machine learning for drug discovery is witnessing an explosion of novel methods. These methods are often benchmarked on simple physicochemical properties such as solubility or general druglikeness, which can be readily…

Build scripts automate the process of compiling source code, managing dependencies, running tests, and packaging software into deployable artifacts. These scripts are ubiquitous in modern software development pipelines for streamlining…

GitHub is the world's largest host of source code, with more than 150M repositories. However, most of these repositories are not labeled or inadequately so, making it harder for users to find relevant projects. There have been various…