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This work introduces Pressio, an open-source project aimed at enabling leading-edge projection-based reduced order models (ROMs) for large-scale nonlinear dynamical systems in science and engineering. Pressio provides model-reduction…

数学软件 · 计算机科学 2021-09-02 Francesco Rizzi , Patrick J. Blonigan , Eric J. Parish , Kevin T. Carlberg

Setting up robot environments to quickly test newly developed algorithms is still a difficult and time consuming process. This presents a significant hurdle to researchers interested in performing real-world robotic experiments. RobotIO is…

机器人学 · 计算机科学 2022-08-17 Lukas Hermann , Max Argus , Adrian Roefer , Abhinav Valada , Thomas Brox

In recent years, the Robot Operating System (ROS) is developing rapidly and has been widely used in robotics research because of its flexible, open source, and extensive advantages. In scientific research, the corresponding hardware…

机器人学 · 计算机科学 2018-04-10 Liulong Ma , Yibo Gao , ChuanMing Zhu , Yanjie Liu

Deep learning in \emph{de novo} protein design has achieved atomic-level fidelity. However, existing models remain largely non-deliberative: they directly synthesize molecular geometries without explicitly reasoning about which residues or…

The choice of structural resolution is a fundamental aspect of protein modelling, determining the balance between descriptive power and interpretability. Although atomistic simulations provide maximal detail, much of this information is…

生物大分子 · 定量生物学 2025-10-23 Margherita Mele , Raffaele Fiorentini , Thomas Tarenzi , Giovanni Mattiotti , Raffaello Potestio

The genome-scale metabolic model with protein constraint (PC-model) has been increasingly popular for microbial metabolic simulations. We present PROSO Toolbox, a unified and simple-to-use PC-model toolbox that takes any high-quality…

分子网络 · 定量生物学 2023-08-30 Haoyang Yao , Laurence Yang

Numerous cellular functions rely on protein$\unicode{x2013}$protein interactions. Efforts to comprehensively characterize them remain challenged however by the diversity of molecular recognition mechanisms employed within the proteome. Deep…

生物大分子 · 定量生物学 2023-12-08 Julia R. Rogers , Gergő Nikolényi , Mohammed AlQuraishi

Despite recent efforts to collect multi-task, multi-embodiment datasets, to design recipes for training Vision-Language-Action models (VLAs), and to showcase these models on different robot platforms, generalist cross-embodiment robot…

This paper introduces ROmodel, an open source Python package extending the modeling capabilities of the algebraic modeling language Pyomo to robust optimization problems. ROmodel helps practitioners transition from deterministic to robust…

最优化与控制 · 数学 2021-05-19 Johannes Wiebe , Ruth Misener

Human-robot interaction requires a common understanding of the operational environment, which can be provided by a representation that blends geometric and symbolic knowledge: a semantic map. Through a semantic map the robot can interpret…

机器人学 · 计算机科学 2021-05-18 Sara Kaszuba , Sandeep Reddy Sabbella , Vincenzo Suriani , Francesco Riccio , Daniele Nardi

An emerging theme across many domains of science and engineering is materials that change shape, often dramatically. Determining their structure involves solving a shape optimization problem where a given energy functional is minimized with…

Robotics poses a challenge for software engineering as the vast numbers of different robot platforms impose different requirements on robot control architectures. The platform dependent development of robotic applications impedes…

软件工程 · 计算机科学 2014-09-09 Jan Oliver Ringert , Bernhard Rumpe , Andreas Wortmann

Proteins are inherently multiscale physical systems whose functional properties emerge from coordinated structural organization across multiple spatial resolutions, ranging from atomic interactions to global fold topology. However, existing…

机器学习 · 计算机科学 2026-05-13 Viet Thanh Duy Nguyen , John K. Johnstone , Truong-Son Hy

Predicting the structure of a protein from its sequence is a cornerstone task of molecular biology. Established methods in the field, such as homology modeling and fragment assembly, appeared to have reached their limit. However, this year…

机器学习 · 计算机科学 2018-12-05 Georgy Derevyanko , Guillaume Lamoureux

This paper presents an open-source, lightweight, yet comprehensive software framework, named RPC, which integrates physics-based simulators, planning and control libraries, debugging tools, and a user-friendly operator interface. RPC…

机器人学 · 计算机科学 2024-09-17 Seung Hyeon Bang , Carlos Gonzalez , Gabriel Moore , Dong Ho Kang , Mingyo Seo , Luis Sentis

Success in generative modeling across language, image, and video demonstrates that large, well-curated datasets are the key driver for building capable models. 3D Human motion, however, has lagged behind, constrained by an unsatisfying…

Deep learning is catalyzing a scientific revolution fueled by big data, accessible toolkits, and powerful computational resources, impacting many fields including protein structural modeling. Protein structural modeling, such as predicting…

生物大分子 · 定量生物学 2020-07-17 Wenhao Gao , Sai Pooja Mahajan , Jeremias Sulam , Jeffrey J. Gray

We present the Robotic Overlay coMmunicAtioN prOtocol (ROMANO), a lightweight, application layer overlay communication protocol for a unified sensing and control abstraction of a network of heterogeneous robots mainly consisting of low…

机器人学 · 计算机科学 2017-09-25 Pradipta Ghosh , Jason A. Tran , Daniel Dsouza , Nora Ayanian , Bhaskar Krishnamachari

Protein language models (PLMs) have shown promise in improving the understanding of protein sequences, contributing to advances in areas such as function prediction and protein engineering. However, training these models from scratch…

机器学习 · 计算机科学 2024-12-19 Shivasankaran Vanaja Pandi , Bharath Ramsundar

With the spread of robots in unstructured, dynamic environments, the topic of path replanning has gained importance in the robotics community. Although the number of replanning strategies has significantly increased, there is a lack of…

机器人学 · 计算机科学 2023-12-01 Cesare Tonola , Manuel Beschi , Marco Faroni , Nicola Pedrocchi
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