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Levenshtein distance is a commonly used edit distance metric, typically applied in language processing, and to a lesser extent, in molecular biology analysis. Biological nucleic acid sequences are often embedded in longer sequences and are…

定量方法 · 定量生物学 2023-10-20 Robert Logan , Amy W. Wehe , Dori C. Woods , Jon Tilly , Konstantin Khrapko

String edit distances have been used for decades in applications ranging from spelling correction and web search suggestions to DNA analysis. Most string edit distances are variations of the Levenshtein distance and consider only…

基因组学 · 定量生物学 2022-05-12 Taylor Petty , Jan Hannig , Tunde I Huszar , Hari Iyer

The edit distance (a.k.a. the Levenshtein distance) between two strings is defined as the minimum number of insertions, deletions or substitutions of symbols needed to transform one string into another. The problem of computing the edit…

计算复杂性 · 计算机科学 2017-08-17 Arturs Backurs , Piotr Indyk

The normalized edit distance is one of the distances derived from the edit distance. It is useful in some applications because it takes into account the lengths of the two strings compared. The normalized edit distance is not defined in…

神经与进化计算 · 计算机科学 2013-12-09 Muhammad Marwan Muhammad Fuad

Edit distance is a measurement of similarity between two sequences such as strings, point sequences, or polygonal curves. Many matching problems from a variety of areas, such as signal analysis, bioinformatics, etc., need to be solved in a…

计算几何 · 计算机科学 2020-09-10 Kyle Fox , Xinyi Li

This research project aimed to overcome the challenge of analysing human language relationships, facilitate the grouping of languages and formation of genealogical relationship between them by developing automated comparison techniques.…

计算与语言 · 计算机科学 2020-02-03 Gabija Mikulyte , David Gilbert

In many applications, it is necessary to determine the similarity of two strings. A widely-used notion of string similarity is the edit distance: the minimum number of insertions, deletions, and substitutions required to transform one…

cmp-lg · 计算机科学 2008-02-03 Eric Sven Ristad , Peter N. Yianilos

Text similarity calculation is a fundamental problem in natural language processing and related fields. In recent years, deep neural networks have been developed to perform the task and high performances have been achieved. The neural…

计算与语言 · 计算机科学 2018-10-26 Yilin Niu , Chao Qiao , Hang Li , Minlie Huang

The edit distance is a fundamental measure of sequence similarity, defined as the minimum number of character insertions, deletions, and substitutions needed to transform one string into the other. Given two strings of length at most $n$,…

数据结构与算法 · 计算机科学 2023-07-17 Tomasz Kociumaka , Anish Mukherjee , Barna Saha

This paper revisits recent code similarity evaluation metrics, particularly focusing on the application of Abstract Syntax Tree (AST) editing distance in diverse programming languages. In particular, we explore the usefulness of these…

计算与语言 · 计算机科学 2025-06-06 Yewei Song , Cedric Lothritz , Daniel Tang , Tegawendé F. Bissyandé , Jacques Klein

Graph edit distance (GED) is a powerful and flexible graph matching paradigm that can be used to address different tasks in structural pattern recognition, machine learning, and data mining. In this paper, some new binary linear programming…

数据结构与算法 · 计算机科学 2015-05-22 Julien Lerouge , Zeina Abu-Aisheh , Romain Raveaux , Pierre Héroux , Sébastien Adam

In this paper, we present a novel error measure to compare a segmentation against ground truth. This measure, which we call Tolerant Edit Distance (TED), is motivated by two observations: (1) Some errors, like small boundary shifts, are…

计算机视觉与模式识别 · 计算机科学 2016-02-02 Jan Funke , Francesc Moreno-Noguer , Albert Cardona , Matthew Cook

Edit-distance-based string similarity search has many applications such as spell correction, data de-duplication, and sequence alignment. However, computing edit distance is known to have high complexity, which makes string similarity…

数据库 · 计算机科学 2020-05-25 Xinyan Dai , Xiao Yan , Kaiwen Zhou , Yuxuan Wang , Han Yang , James Cheng

The Levenshtein distance is an important tool for the comparison of symbolic sequences, with many appearances in genome research, linguistics and other areas. For efficient applications, an approximation by a distance of smaller…

定量方法 · 定量生物学 2007-05-23 Michael Baake , Uwe Grimm , Robert Giegerich

The tutorial describes the concept of edit distances applied to research and commercial contexts. We use Translation Edit Rate (TER), Levenshtein, Damerau-Levenshtein, Longest Common Subsequence and $n$-gram distances to demonstrate the…

计算与语言 · 计算机科学 2024-10-10 Félix do Carmo , Diptesh Kanojia

This paper presents a novel approach to calculating the Levenshtein (edit) distance within the framework of Fully Homomorphic Encryption (FHE), specifically targeting third-generation schemes like TFHE. Edit distance computations are…

密码学与安全 · 计算机科学 2025-08-21 Wouter Legiest , Jan-Pieter D'Anvers , Bojan Spasic , Nam-Luc Tran , Ingrid Verbauwhede

We present novel randomized approximation schemes for the Edit Distance (ED) problem and the Longest Common Subsequence (LCS) problem that, for any constant $\epsilon>0$, compute a $(1+\epsilon)$-approximation for ED and a…

数据结构与算法 · 计算机科学 2026-04-01 Xiao Mao , Aviad Rubinstein

The graph edit distance (GED) is a well-established distance measure widely used in many applications. However, existing methods for the GED computation suffer from several drawbacks including oversized search space, huge memory…

数据结构与算法 · 计算机科学 2017-10-02 Xiaoyang Chen , Hongwei Huo , Jun Huan , Jeffrey Scott Vitter

In a way similar to the string-to-string correction problem we address time series similarity in the light of a time-series-to-time-series-correction problem for which the similarity between two time series is measured as the minimum cost…

信息检索 · 计算机科学 2008-12-28 Pierre-François Marteau

Assessing the extent of human edits on texts generated by Large Language Models (LLMs) is crucial to understanding the human-AI interactions and improving the quality of automated text generation systems. Existing edit distance metrics,…

计算与语言 · 计算机科学 2024-12-24 Nicolas Devatine , Louis Abraham
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