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Biomolecular condensates are formed via liquid-liquid phase separation of proteins, often together with nucleic acids, typically driven by interactions between low-affinity binding sites. The computational study of such condensates that…

软凝聚态物质 · 物理学 2025-01-16 Alena Taskina , Devika Magan , Simon Dannenberg , Stefan Klumpp

Despite the diversity of materials designated as active matter, virtually all active systems undergo a form of dynamic arrest when crowding and activity compete, reminiscent of the dynamic arrest observed in colloidal and molecular fluids…

软凝聚态物质 · 物理学 2019-05-28 Ludovic Berthier , Elijah Flenner , Grzegorz Szamel

We introduce a three-dimensional lattice gas model to study the glass transition. In this model the interactions come from the excluded volume and particles have five arms with an asymmetrical shape, which results in geometric frustration…

统计力学 · 物理学 2007-05-23 Anastasio Díaz-Sánchez

The binary hard-sphere mixture is one of the simplest representations of a many-body system with competing time and length scales. This model is relevant to fundamentally understand both the structural and dynamical properties of materials,…

Water and glycerol are well-known to facilitate the structural relaxation of amorphous protein matrices. However, several studies evidenced that they may also limit fast ($\sim$ pico-nanosecond, ps-ns) and small-amplitude ($\sim$ \AA )…

软凝聚态物质 · 物理学 2017-10-03 Adrien Lerbret , Frédéric Affouard

We have carried out computer simulations of overcompressed suspensions of hard monodisperse ellipsoids and observed their crystallization dynamics. The system was compressed very rapidly in order to reach the regime of slow, glass-like…

软凝聚态物质 · 物理学 2013-10-01 Sven Dorosz , Tanja Schilling

The physics of glasses can be studied from many viewpoints, from material scientists interested in the development of new materials to statistical physicists inventing new theoretical tools to deal with disordered systems. In these lectures…

统计力学 · 物理学 2007-05-23 Ludovic Berthier

We have studied the effect of small amounts of added liquid on the dynamic behavior of a granular system consisting of spherical glass beads. The critical acceleration $\Gamma$ for fluidization is found to increase strongly when liquid is…

统计力学 · 物理学 2007-05-23 Dimitrios Geromichalos , Mario Scheel , Stephan Herminghaus

A simple model of a glass former fluid, consisting of a bidisperse mixture of penetrable spheres is studied. The model shows a transition from fragile to strong behavior as temperature is reduced. This transition is driven by the…

凝聚态物理 · 物理学 2009-10-31 E. A. Jagla

Cell neighbor exchanges are integral to tissue rearrangements in biology, including development and repair. Often these processes occur via topological T1 transitions analogous to those observed in foams, grains and colloids. However, in…

软凝聚态物质 · 物理学 2023-05-16 Amit Das , Srikanth Sastry , Dapeng Bi

Molecular anisotropy plays an important role in the glass transition of a liquid. Recently, a novel bulk glass state has been discovered by optical microscopy experiments on suspensions of ellipsoidal colloids. 'Liquid glass' is a…

软凝聚态物质 · 物理学 2024-05-16 Mohammed Alhissi , Andreas Zumbusch , Matthias Fuchs

Concentrated colloidal suspensions are a well-tested model system which has a glass transition. Colloids are suspensions of small solid particles in a liquid, and exhibit glassy behavior when the particle concentration is high; the…

软凝聚态物质 · 物理学 2010-10-01 Luca Cipelletti , Eric R. Weeks

In this article we study a simple spin model which has a non-interacting Hamiltonian but constrained dynamics. The model, which is a simplification of a purely toplogical cellular model, displays glassy behaviour, involves activated…

无序系统与神经网络 · 物理学 2009-11-07 Lexie Davison , David Sherrington , Juan P. Garrahan , Arnaud Buhot

In this paper we investigate, both analytically and numerically, the emergence of a kinetic glass transition in two different model systems: a uniformly heated granular gas and a molecular fluid with nonlinear drag. Despite the profound…

软凝聚态物质 · 物理学 2024-04-25 A. Patrón , B. Sánchez-Rey , A. Prados

We use large-scale molecular dynamics simulations to study the kinetics of the liquid-gas phase separation if the temperature is lowered across the glass transition of the dense phase. We observe a gradual change from phase separated…

统计力学 · 物理学 2011-06-01 Vincent Testard , Ludovic Berthier , Walter Kob

The role of porous structure and glass density in response to compressive deformation of amorphous materials is investigated via molecular dynamics simulations. The disordered, porous structures were prepared by quenching a high-temperature…

软凝聚态物质 · 物理学 2018-09-18 Nikolai V. Priezjev , Maxim A. Makeev

In an effort to understand the glass transition, the kinetics of a spin model with frustration but no quenched randomness has been analyzed. The phenomenology of the spin model is remarkably similiar to that of structural glasses. Analysis…

统计力学 · 物理学 2009-10-31 Bulbul Chakraborty , Lei Gu , Hui Yin

Many biological tissues are viscoelastic, behaving as elastic solids on short timescales and fluids on long timescales. This collective mechanical behavior enables and helps to guide pattern formation and tissue layering. Here we…

软凝聚态物质 · 物理学 2013-07-18 Eva-Maria Schoetz , Marcos Lanio , Jared A. Talbot , M. Lisa Manning

The nature of glassy dynamics and the glass transition are long-standing problems under active debate. In the presence of a structural disorder widely believed to be an essential characteristic of structural glass, identifying and…

By means of the isoconfigurational method we calculate the change in the propensity for motion that the structure of a glass-forming system experiences during its relaxation dynamics. The relaxation of such a system has been demonstrated to…

软凝聚态物质 · 物理学 2008-10-09 J. A. Rodriguez Fris , L. M. Alarcón , G. A. Appignanesi