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Graph Convolutional Network (GCN) with the powerful capacity to explore graph-structural data has gained noticeable success in recent years. Nonetheless, most of the existing GCN-based models suffer from the notorious over-smoothing issue,…

机器学习 · 计算机科学 2023-04-17 Zhaoliang Chen , Zhihao Wu , Zhenghong Lin , Shiping Wang , Claudia Plant , Wenzhong Guo

Efficient and effective drug-target binding affinity (DTBA) prediction is a challenging task due to the limited computational resources in practical applications and is a crucial basis for drug screening. Inspired by the good representation…

生物大分子 · 定量生物学 2022-06-15 Shuke Zhang , Yanzhao Jin , Tianmeng Liu , Qi Wang , Zhaohui Zhang , Shuliang Zhao , Bo Shan

Graph Neural Networks (GNNs) have demonstrated impressive capabilities in modeling graph-structured data, while Spiking Neural Networks (SNNs) offer high energy efficiency through sparse, event-driven computation. However, existing spiking…

神经与进化计算 · 计算机科学 2025-08-26 Bowen Zhang , Genan Dai , Hu Huang , Long Lan

The prediction of phase diagrams in the search for new phases is a complex and computationally intensive task. Density functional theory provides, in many situations, the desired accuracy, but its throughput becomes prohibitively limited as…

材料科学 · 物理学 2023-09-19 Michael Minotakis , Hugo Rossignol , Matteo Cobelli , Stefano Sanvito

Graph neural networks (GNNs) have attracted significant attention for their outstanding performance in graph learning and node classification tasks. However, their vulnerability to adversarial attacks, particularly through susceptible…

机器学习 · 计算机科学 2024-11-19 Sepideh Neshatfar , Salimeh Yasaei Sekeh

Among the many variants of graph neural network (GNN) architectures capable of modeling data with cross-instance relations, an important subclass involves layers designed such that the forward pass iteratively reduces a graph-regularized…

机器学习 · 计算机科学 2025-03-03 Haitian Jiang , Renjie Liu , Zengfeng Huang , Yichuan Wang , Xiao Yan , Zhenkun Cai , Minjie Wang , David Wipf

Graph Neural Networks (GNNs) have demonstrated commendable performance for graph-structured data. Yet, GNNs are often vulnerable to adversarial structural attacks as embedding generation relies on graph topology. Existing efforts are…

机器学习 · 计算机科学 2024-09-04 Xing Ai , Guanyu Zhu , Yulin Zhu , Yu Zheng , Gaolei Li , Jianhua Li , Kai Zhou

In this study, we present the Graph Sub-Graph Network (GSN), a novel hybrid image classification model merging the strengths of Convolutional Neural Networks (CNNs) for feature extraction and Graph Neural Networks (GNNs) for structural…

计算机视觉与模式识别 · 计算机科学 2024-10-01 Aryan Singh , Pepijn Van de Ven , Ciarán Eising , Patrick Denny

The development of novel sub-nanometer clusters (SNCs) catalysts with superior catalytic performance depends on the precise control of clusters' atomistic sizes, shapes, and accurate deposition onto surfaces. The intrinsic complexity of the…

材料科学 · 物理学 2024-11-06 Yao Wei , Alejandro Santana-Bonilla , Lev Kantorovich

Graph neural networks (GNNs) have limited expressive power, failing to represent many graph classes correctly. While more expressive graph representation learning (GRL) alternatives can distinguish some of these classes, they are…

机器学习 · 计算机科学 2021-12-08 Leonardo Cotta , Christopher Morris , Bruno Ribeiro

Recently, there have been some breakthroughs in graph analysis by applying the graph neural networks (GNNs) following a neighborhood aggregation scheme, which demonstrate outstanding performance in many tasks. However, we observe that the…

机器学习 · 计算机科学 2021-04-13 Hanchen Wang , Defu Lian , Ying Zhang , Lu Qin , Xiangjian He , Yiguang Lin , Xuemin Lin

Machine learning (ML) methods have drawn significant interest in material design and discovery. Graph neural networks (GNNs), in particular, have demonstrated strong potential for predicting material properties. The present study proposes a…

Computational materials discovery is limited by the high cost of first-principles calculations. Machine learning (ML) potentials that predict energies from crystal structures are promising, but existing methods face computational…

Drug Discovery is a fundamental and ever-evolving field of research. The design of new candidate molecules requires large amounts of time and money, and computational methods are being increasingly employed to cut these costs. Machine…

机器学习 · 统计学 2021-05-28 Pietro Bongini , Monica Bianchini , Franco Scarselli

The understanding of inorganic reactions, especially those far from the equilibrium state, is relatively limited due to their inherent complexity. Poor understandings on the underlying synthetic chemistry have constrained the design of…

计算物理 · 物理学 2018-11-09 Jiali Li , Tiankai Chen , Kaizhuo Lim , Lingtong Chen , Saif A. Khan , Jianping Xie , Xiaonan Wang

Implicit graph neural networks have gained popularity in recent years as they capture long-range dependencies while improving predictive performance in static graphs. Despite the tussle between performance degradation due to the…

机器学习 · 计算机科学 2024-06-27 Yongjian Zhong , Hieu Vu , Tianbao Yang , Bijaya Adhikari

This work presents a new approach for premixed turbulent combustion modeling based on convolutional neural networks (CNN). We first propose a framework to reformulate the problem of subgrid flame surface density estimation as a machine…

流体动力学 · 物理学 2019-08-02 C. J. Lapeyre , A. Misdariis , N. Cazard , D. Veynante , T. Poinsot

This study presents a deep learning approach to predicting structural and electronic properties of materials using Graph Neural Networks (GNNs). Leveraging data from the Materials Project database, we construct graph representations of…

无序系统与神经网络 · 物理学 2024-12-20 Selva Chandrasekaran Selvaraj

Machine learning (ML) models have emerged as powerful tools for accelerating materials discovery and design by enabling accurate predictions of properties from compositional and structural data. These capabilities are vital for developing…

Link prediction on graphs is a fundamental problem. Subgraph representation learning approaches (SGRLs), by transforming link prediction to graph classification on the subgraphs around the links, have achieved state-of-the-art performance…

机器学习 · 计算机科学 2024-10-21 Paul Louis , Shweta Ann Jacob , Amirali Salehi-Abari