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We demonstrate the use of deep learning for fast spectral deconstruction of speckle patterns. The artificial neural network can be effectively trained using numerically constructed multispectral datasets taken from a measured spectral…

图像与视频处理 · 电气工程与系统科学 2019-07-16 Ulas Kürüm , P. R. Wiecha , Rebecca French , Otto L. Muskens

Protein function is inherently linked to its localization within the cell, and fluorescent microscopy data is an indispensable resource for learning representations of proteins. Despite major developments in molecular representation…

定量方法 · 定量生物学 2022-05-25 Anastasia Razdaibiedina , Alexander Brechalov

Automatic cell detection in histology images is a challenging task due to varying size, shape and features of cells and stain variations across a large cohort. Conventional deep learning methods regress the probability of each pixel…

计算机视觉与模式识别 · 计算机科学 2018-06-20 Shan E Ahmed Raza , Khalid AbdulJabbar , Mariam Jamal-Hanjani , Selvaraju Veeriah , John Le Quesne , Charles Swanton , Yinyin Yuan

Light-field microscopes are able to capture spatial and angular information of incident light rays. This allows reconstructing 3D locations of neurons from a single snap-shot.In this work, we propose a model-inspired deep learning approach…

图像与视频处理 · 电气工程与系统科学 2021-03-11 Pingfan Song , Herman Verinaz Jadan , Carmel L. Howe , Peter Quicke , Amanda J. Foust , Pier Luigi Dragotti

Recent years have witnessed the tremendous development of fusing fiber-optic imaging with supervised deep learning to enable high-quality imaging of hard-to-reach areas. Nevertheless, the supervised deep learning method imposes strict…

Performance is a critical challenge in mobile image processing. Given a reference imaging pipeline, or even human-adjusted pairs of images, we seek to reproduce the enhancements and enable real-time evaluation. For this, we introduce a new…

图形学 · 计算机科学 2017-08-24 Michaël Gharbi , Jiawen Chen , Jonathan T. Barron , Samuel W. Hasinoff , Frédo Durand

Constructing 3D structures from serial section data is a long standing problem in microscopy. The structure of a fiber reinforced composite material can be reconstructed using a tracking-by-detection model. Tracking-by-detection algorithms…

计算机视觉与模式识别 · 计算机科学 2018-05-28 Hongkai Yu , Dazhou Guo , Zhipeng Yan , Wei Liu , Jeff Simmons , Craig P. Przybyla , Song Wang

We use Deep Neural Networks (DNNs) to classify and reconstruct a large database of handwritten digits from the intensity of the speckle patterns that result after the images propagated through multimode fibers (MMF). Images transmitted…

光学 · 物理学 2018-08-21 Navid Borhani , Eirini Kakkava , Christophe Moser , Demetri Psaltis

Object segmentation and structure localization are important steps in automated image analysis pipelines for microscopy images. We present a convolution neural network (CNN) based deep learning architecture for segmentation of objects in…

计算机视觉与模式识别 · 计算机科学 2019-01-24 Shan E Ahmed Raza , Linda Cheung , Muhammad Shaban , Simon Graham , David Epstein , Stella Pelengaris , Michael Khan , Nasir M. Rajpoot

Multimode fibers (MMFs) have the potential to carry complex images for endoscopy and related applications, but decoding the complex speckle patterns produced by mode-mixing and modal dispersion in MMFs is a serious challenge. Several groups…

图像与视频处理 · 电气工程与系统科学 2020-09-02 Changyan Zhu , Eng Aik Chan , You Wang , Weina Peng , Ruixiang Guo , Baile Zhang , Cesare Soci , Yidong Chong

An approach to incorporate deep learning within an iterative image reconstruction framework to reconstruct images from severely incomplete measurement data is presented. Specifically, we utilize a convolutional neural network (CNN) as a…

计算机视觉与模式识别 · 计算机科学 2017-09-05 Brendan Kelly , Thomas P. Matthews , Mark A. Anastasio

Deep learning has been proven to yield reliably generalizable answers to numerous classification and decision tasks. Here, we demonstrate for the first time, to our knowledge, that deep neural networks (DNNs) can be trained to solve inverse…

计算机视觉与模式识别 · 计算机科学 2017-06-27 Ayan Sinha , Justin Lee , Shuai Li , George Barbastathis

We demonstrate that a deep neural network can significantly improve optical microscopy, enhancing its spatial resolution over a large field-of-view and depth-of-field. After its training, the only input to this network is an image acquired…

机器学习 · 计算机科学 2017-11-21 Yair Rivenson , Zoltan Gorocs , Harun Gunaydin , Yibo Zhang , Hongda Wang , Aydogan Ozcan

We report the development of deep learning coherent electron diffractive imaging at sub-angstrom resolution using convolutional neural networks (CNNs) trained with only simulated data. We experimentally demonstrate this method by applying…

Multimode fibers (MMF) are an example of a highly scattering medium which scramble the coherent light propagating within them and produce seemingly random patterns. Thus, for applications such as imaging and image projection through a MMF,…

When multimode optical fibers are perturbed, the data that is transmitted through them is scrambled. This presents a major difficulty for many possible applications, such as multimode fiber-based telecommunication and endoscopy. To overcome…

图像与视频处理 · 电气工程与系统科学 2022-02-17 Shachar Resisi , Sebastien M. Popoff , Yaron Bromberg

We propose an automatic preprocessing and ensemble learning for segmentation of cell images with low quality. It is difficult to capture cells with strong light. Therefore, the microscopic images of cells tend to have low image quality but…

图像与视频处理 · 电气工程与系统科学 2021-08-31 Sota Kato , Kazuhiro Hotta

Deep learning algorithms offer a powerful means to automatically analyze the content of medical images. However, many biological samples of interest are primarily transparent to visible light and contain features that are difficult to…

计算机视觉与模式识别 · 计算机科学 2017-09-22 Roarke Horstmeyer , Richard Y. Chen , Barbara Kappes , Benjamin Judkewitz

By their very nature microscopy images of cells and tissues consist of a limited number of object types or components. In contrast to most natural scenes, the composition is known a priori. Decomposing biological images into semantically…

计算机视觉与模式识别 · 计算机科学 2019-09-04 Avelino Javer , Jens Rittscher

Convolutional Neural Networks are a well-known staple of modern image classification. However, it can be difficult to assess the quality and robustness of such models. Deep models are known to perform well on a given training and estimation…

机器学习 · 统计学 2018-02-06 Alexey Chaplygin , Joshua Chacksfield
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