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Computational analysis of multiplexed immunofluorescence histology data is emerging as an important method for understanding the tumour micro-environment in cancer. This work presents HEMIT, a dataset designed for translating Hematoxylin…

图像与视频处理 · 电气工程与系统科学 2024-09-30 Chang Bian , Beth Philips , Tim Cootes , Martin Fergie

Graph autoencoders (AE) and variational autoencoders (VAE) recently emerged as powerful node embedding methods, with promising performances on challenging tasks such as link prediction and node clustering. Graph AE, VAE and most of their…

机器学习 · 计算机科学 2019-10-03 Guillaume Salha , Romain Hennequin , Michalis Vazirgiannis

Breast ultrasound imaging is a valuable tool for early breast cancer detection, but automated tumor segmentation is challenging due to inherent noise, variations in scale of lesions, and fuzzy boundaries. To address these challenges, we…

图像与视频处理 · 电气工程与系统科学 2025-06-23 Muhammad Azeem Aslam , Asim Naveed , Nisar Ahmed

Microscopic histology image analysis is a cornerstone in early detection of breast cancer. However these images are very large and manual analysis is error prone and very time consuming. Thus automating this process is in high demand. We…

计算机视觉与模式识别 · 计算机科学 2018-10-23 Ismaël Koné , Lahsen Boulmane

Gene expression profiles have been widely used to characterize patterns of cellular responses to diseases. As data becomes available, scalable learning toolkits become essential to processing large datasets using deep learning models to…

机器学习 · 计算机科学 2019-02-01 Ya Ju Fan , Jonathan E. Allen , Sam Ade Jacobs , Brian C. Van Essen

Breast cancer is one of the most common cancers among women globally, with early diagnosis and precise classification being crucial. With the advancement of deep learning and computer vision, the automatic classification of breast tissue…

图像与视频处理 · 电气工程与系统科学 2025-01-20 Jiacheng Hao , Yiqing Liu , Siqi Zeng , Yonghong He

Melanoma is an aggressive form of skin cancer with rapid progression and high metastatic potential. Accurate characterisation of tissue morphology in melanoma is crucial for prognosis and treatment planning. However, manual segmentation of…

图像与视频处理 · 电气工程与系统科学 2025-07-21 Jiaqi Lv , Yijie Zhu , Carmen Guadalupe Colin Tenorio , Brinder Singh Chohan , Mark Eastwood , Shan E Ahmed Raza

This study introduces a novel and accurate approach to breast cancer classification using histopathology images. It systematically compares leading Convolutional Neural Network (CNN) models across varying image datasets, identifies their…

计算机视觉与模式识别 · 计算机科学 2024-10-07 Gary Murphy , Raghubir Singh

Many of the existing machine learning algorithms, both supervised and unsupervised, depend on the quality of the input characteristics to generate a good model. The amount of these variables is also important, since performance tends to…

机器学习 · 计算机科学 2018-01-08 David Charte , Francisco Charte , Salvador García , María J. del Jesus , Francisco Herrera

Autoencoders (AE) provide a useful method for nonlinear dimensionality reduction but are ill-suited for low data regimes. Conversely, Principal Component Analysis (PCA) is data-efficient but is limited to linear dimensionality reduction,…

Segmentation and accurate localization of nuclei in histopathological images is a very challenging problem, with most existing approaches adopting a supervised strategy. These methods usually rely on manual annotations that require a lot of…

图像与视频处理 · 电气工程与系统科学 2020-07-17 Mihir Sahasrabudhe , Stergios Christodoulidis , Roberto Salgado , Stefan Michiels , Sherene Loi , Fabrice André , Nikos Paragios , Maria Vakalopoulou

Hematoxylin and Eosin stained histopathology image analysis is essential for the diagnosis and study of complicated diseases such as cancer. Existing state-of-the-art approaches demand extensive amount of supervised training data from…

计算机视觉与模式识别 · 计算机科学 2017-12-15 Le Hou , Ayush Agarwal , Dimitris Samaras , Tahsin M. Kurc , Rajarsi R. Gupta , Joel H. Saltz

Autoencoder (AE) is the key to the success of latent diffusion models for image and video generation, reducing the denoising resolution and improving efficiency. However, the power of AE has long been underexplored in terms of network…

计算机视觉与模式识别 · 计算机科学 2025-10-02 Yushu Wu , Yanyu Li , Ivan Skorokhodov , Anil Kag , Willi Menapace , Sharath Girish , Aliaksandr Siarohin , Yanzhi Wang , Sergey Tulyakov

Pan-cancer classification using transcriptomic (RNA-Seq) data can inform tumor subtyping and therapy selection, but is challenging due to extremely high dimensionality and limited sample sizes. In this study, we propose a novel deep…

基因组学 · 定量生物学 2025-08-06 Vinil Polepalli

Deep learning has shown a great improvement in the performance of visual tasks. Image retrieval is the task of extracting the visually similar images from a database for a query image. The feature matching is performed to rank the images.…

计算机视觉与模式识别 · 计算机科学 2021-05-25 Satya Rajendra Singh , Shiv Ram Dubey , Shruthi MS , Sairathan Ventrapragada , Saivamshi Salla Dasharatha

Hypoxia occurs when tumour cells outgrow their blood supply, leading to regions of low oxygen levels within the tumour. Calculating hypoxia levels can be an important step in understanding the biology of tumours, their clinical progression…

计算机视觉与模式识别 · 计算机科学 2023-11-22 Petru Manescu , Joseph Geradts , Delmiro Fernandez-Reyes

In biomedical imaging, deep learning-based methods are state-of-the-art for every modality (virtual slides, MRI, etc.) In histopathology, these methods can be used to detect certain biomarkers or classify lesions. However, such techniques…

While multiplex immunofluorescence (mIF) imaging provides deep, spatially-resolved molecular data, integrating this information with the morphological standard of Hematoxylin & Eosin (H&E) can be very important for obtaining complementary…

定量方法 · 定量生物学 2025-08-08 Jillur Rahman Saurav , Mohammad Sadegh Nasr , Jacob M. Luber

Histological staining of tissue biopsies, especially hematoxylin and eosin (H&E) staining, serves as the benchmark for disease diagnosis and comprehensive clinical assessment of tissue. However, the process is laborious and time-consuming,…

Throughout the world, breast cancer is one of the leading causes of female death. Recently, deep learning methods are developed to automatically grade breast cancer of histological slides. However, the performance of existing deep learning…

计算机视觉与模式识别 · 计算机科学 2022-03-09 Yanyuet Man , Xiangyun Ding , Xingcheng Yao , Han Bao
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