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相关论文: Ribosome self-assembly leads to overlapping reprod…

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The ribosome is a macromolecular complex which is responsible for protein synthesis in all living cells according to their transcribed genetic information. Using X-ray crystallography and, more recently, cryo-electron microscopy (cryo-EM),…

生物物理 · 物理学 2017-11-17 Lars V. Bock , Michal H. Kolář , Helmut Grubmüller

We report observations of the self-assembly of coated droplets into regular clusters at the sudden expansion of a microfluidic channel. A double emulsion consisting of a regular train of coated microdroplets was created upstream of the…

软凝聚态物质 · 物理学 2020-10-19 Kerstin Schirrmann , Gabriel Cáceres-Aravena , Anne Juel

Cellular functions are established through biological evolution, but are constrained by the laws of physics. For instance, the physics of protein folding limits the lengths of cellular polypeptide chains. Consequently, many cellular…

生物物理 · 物理学 2019-07-09 Pablo Sartori , Stanislas Leibler

All proteins in living organisms are produced in ribosomes that facilitate the translation of genetic information into a sequence of amino acid residues. During translation, the ribosome undergoes initiation, elongation, termination, and…

生物物理 · 物理学 2024-09-20 Michal H. Kolář , Hugo Mc Grath , Felipe C. Nepomuceno , Michaela Černeková

The evolution of multicellular organisms from monocellular ancestors represents one of the greatest advances of the history of life. The assembly of such multicellular organisms requires signalling and response between cells: over millions…

细胞行为 · 定量生物学 2007-05-23 Graeme J. Ackland , Richard D. L. Hanes , Morrel H. Cohen

The cornerstone of structural biology is the unique relationship between protein sequence and the 3D structure at equilibrium. Although intrinsically disordered proteins (IDPs) do not fold into a specific 3D structure, breaking this…

Biological systems exploit self-assembly to create complex structures whose arrangements are finely controlled from molecular to mesoscopic level. Herein we report an example of using fully synthetic systems that mimic two levels of…

Understanding interactions between microparticles and lipid membranes is of increasing importance, especially for unraveling the influence of microplastics on our health and environment. Here, we study how a short-ranged adhesive force…

软凝聚态物质 · 物理学 2017-10-11 Casper van der Wel , Doris Heinrich , Daniela J. Kraft

A collection of thin structures buckle, bend, and bump into each-other when confined. This contact can lead to the formation of patterns: hair will self-organize in curls; DNA strands will layer into cell nuclei; paper, when crumpled, will…

软凝聚态物质 · 物理学 2023-04-19 Arman Guerra , Anja Slim , Douglas P. Holmes , Ousmane Kodio

We consider a general growth mechanism, which acts at cellular level and above (organs, systems and whole organisms). Using its mathematical representation, the growth equation, we study the growth and division mechanisms of amoeba and…

其他定量生物学 · 定量生物学 2016-10-06 Yuri K. Shestopaloff

Many biological materials must couple mechanical strength with the ability to rapidly self-assemble at a specific location. In particular, biomolecular condensates readily self-assemble via phase separation, but may also need to resist…

We describe a computational model for studying the complexity of self-assembled structures with active molecular components. Our model captures notions of growth and movement ubiquitous in biological systems. The model is inspired by…

数据结构与算法 · 计算机科学 2013-01-15 Damien Woods , Ho-Lin Chen , Scott Goodfriend , Nadine Dabby , Erik Winfree , Peng Yin

Strong dipole-exchange interactions due to spontaneously produced contaminant states can trigger rapid dephasing in many-body Rydberg ensembles [E. Goldschmidt et al., PRL 116, 113001 (2016)]. Such broadening has serious implications for…

It has been a puzzling question why some organisms reproduce sexually. Fisher and Muller hypothesized that reproducing by sex can speed up the evolution. They explained that in the sexual reproduction, recombination can combine beneficial…

概率论 · 数学 2021-04-19 Nantawat Udomchatpitak

Biomolecular condensates are liquid- or gel-like droplets of proteins and nucleic acids formed at least in part through liquid-liquid phase separation. Condensates enable diverse functions of cells and the pathogens that infect them,…

We use a coarse-grained model of DNA-functionalized particles to understand the role of DNA chain length on their self-assembly. We find that the increasing chain length for a given particle size decreases the propensity to form ordered…

软凝聚态物质 · 物理学 2020-01-07 Runfang Mao , Jeetain Mittal

Many {\it ribosomes} simultaneously move on the same messenger RNA (mRNA), each synthesizing separately a copy of the same protein. In contrast to the earlier models, here {\it we develop a ``unified'' theoretical model} that not only…

生物物理 · 物理学 2007-05-23 Aakash Basu , Debashish Chowdhury

DNA synthesis in \textit{Xenopus} frog embryos initiates stochastically in time at many sites (origins) along the chromosome. Stochastic initiation implies fluctuations in the time to complete and may lead to cell death if replication takes…

细胞行为 · 定量生物学 2016-11-03 Scott Cheng-Hsin Yang , John Bechhoefer

Microbes require several complex organic molecules for growth. A species may obtain a required factor by taking up molecules released by other species or by synthesizing the molecule. The patterns of uptake and synthesis set a flow of…

种群与进化 · 定量生物学 2014-02-27 Steven A. Frank

Large-scale simultaneous mRNA translation and the resulting competition for the available ribosomes has important implications to the cell's functioning and evolution. Developing a better understanding of the intricate correlations between…

基因组学 · 定量生物学 2015-08-12 Alon Raveh , Michael Margaliot , Eduardo D. Sontag , Tamir Tuller