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Multi-omics data is increasingly being utilized to advance computational methods for cancer classification. However, multi-omics data integration poses significant challenges due to the high dimensionality, data complexity, and distinct…

基因组学 · 定量生物学 2024-10-10 Fadi Alharbi , Aleksandar Vakanski , Boyu Zhang , Murtada K. Elbashir , Mohanad Mohammed

This study focuses on the classification of cancerous and healthy slices from multimodal lung images. The data used in the research comprises Computed Tomography (CT) and Positron Emission Tomography (PET) images. The proposed strategy…

图像与视频处理 · 电气工程与系统科学 2025-02-04 Surochita Pal , Sushmita Mitra

Although machine learning (ML) has shown promise in numerous domains, there are concerns about generalizability to out-of-sample data. This is currently addressed by centrally sharing ample, and importantly diverse, data from multiple…

机器学习 · 计算机科学 2022-12-07 Sarthak Pati , Ujjwal Baid , Brandon Edwards , Micah Sheller , Shih-Han Wang , G Anthony Reina , Patrick Foley , Alexey Gruzdev , Deepthi Karkada , Christos Davatzikos , Chiharu Sako , Satyam Ghodasara , Michel Bilello , Suyash Mohan , Philipp Vollmuth , Gianluca Brugnara , Chandrakanth J Preetha , Felix Sahm , Klaus Maier-Hein , Maximilian Zenk , Martin Bendszus , Wolfgang Wick , Evan Calabrese , Jeffrey Rudie , Javier Villanueva-Meyer , Soonmee Cha , Madhura Ingalhalikar , Manali Jadhav , Umang Pandey , Jitender Saini , John Garrett , Matthew Larson , Robert Jeraj , Stuart Currie , Russell Frood , Kavi Fatania , Raymond Y Huang , Ken Chang , Carmen Balana , Jaume Capellades , Josep Puig , Johannes Trenkler , Josef Pichler , Georg Necker , Andreas Haunschmidt , Stephan Meckel , Gaurav Shukla , Spencer Liem , Gregory S Alexander , Joseph Lombardo , Joshua D Palmer , Adam E Flanders , Adam P Dicker , Haris I Sair , Craig K Jones , Archana Venkataraman , Meirui Jiang , Tiffany Y So , Cheng Chen , Pheng Ann Heng , Qi Dou , Michal Kozubek , Filip Lux , Jan Michálek , Petr Matula , Miloš Keřkovský , Tereza Kopřivová , Marek Dostál , Václav Vybíhal , Michael A Vogelbaum , J Ross Mitchell , Joaquim Farinhas , Joseph A Maldjian , Chandan Ganesh Bangalore Yogananda , Marco C Pinho , Divya Reddy , James Holcomb , Benjamin C Wagner , Benjamin M Ellingson , Timothy F Cloughesy , Catalina Raymond , Talia Oughourlian , Akifumi Hagiwara , Chencai Wang , Minh-Son To , Sargam Bhardwaj , Chee Chong , Marc Agzarian , Alexandre Xavier Falcão , Samuel B Martins , Bernardo C A Teixeira , Flávia Sprenger , David Menotti , Diego R Lucio , Pamela LaMontagne , Daniel Marcus , Benedikt Wiestler , Florian Kofler , Ivan Ezhov , Marie Metz , Rajan Jain , Matthew Lee , Yvonne W Lui , Richard McKinley , Johannes Slotboom , Piotr Radojewski , Raphael Meier , Roland Wiest , Derrick Murcia , Eric Fu , Rourke Haas , John Thompson , David Ryan Ormond , Chaitra Badve , Andrew E Sloan , Vachan Vadmal , Kristin Waite , Rivka R Colen , Linmin Pei , Murat Ak , Ashok Srinivasan , J Rajiv Bapuraj , Arvind Rao , Nicholas Wang , Ota Yoshiaki , Toshio Moritani , Sevcan Turk , Joonsang Lee , Snehal Prabhudesai , Fanny Morón , Jacob Mandel , Konstantinos Kamnitsas , Ben Glocker , Luke V M Dixon , Matthew Williams , Peter Zampakis , Vasileios Panagiotopoulos , Panagiotis Tsiganos , Sotiris Alexiou , Ilias Haliassos , Evangelia I Zacharaki , Konstantinos Moustakas , Christina Kalogeropoulou , Dimitrios M Kardamakis , Yoon Seong Choi , Seung-Koo Lee , Jong Hee Chang , Sung Soo Ahn , Bing Luo , Laila Poisson , Ning Wen , Pallavi Tiwari , Ruchika Verma , Rohan Bareja , Ipsa Yadav , Jonathan Chen , Neeraj Kumar , Marion Smits , Sebastian R van der Voort , Ahmed Alafandi , Fatih Incekara , Maarten MJ Wijnenga , Georgios Kapsas , Renske Gahrmann , Joost W Schouten , Hendrikus J Dubbink , Arnaud JPE Vincent , Martin J van den Bent , Pim J French , Stefan Klein , Yading Yuan , Sonam Sharma , Tzu-Chi Tseng , Saba Adabi , Simone P Niclou , Olivier Keunen , Ann-Christin Hau , Martin Vallières , David Fortin , Martin Lepage , Bennett Landman , Karthik Ramadass , Kaiwen Xu , Silky Chotai , Lola B Chambless , Akshitkumar Mistry , Reid C Thompson , Yuriy Gusev , Krithika Bhuvaneshwar , Anousheh Sayah , Camelia Bencheqroun , Anas Belouali , Subha Madhavan , Thomas C Booth , Alysha Chelliah , Marc Modat , Haris Shuaib , Carmen Dragos , Aly Abayazeed , Kenneth Kolodziej , Michael Hill , Ahmed Abbassy , Shady Gamal , Mahmoud Mekhaimar , Mohamed Qayati , Mauricio Reyes , Ji Eun Park , Jihye Yun , Ho Sung Kim , Abhishek Mahajan , Mark Muzi , Sean Benson , Regina G H Beets-Tan , Jonas Teuwen , Alejandro Herrera-Trujillo , Maria Trujillo , William Escobar , Ana Abello , Jose Bernal , Jhon Gómez , Joseph Choi , Stephen Baek , Yusung Kim , Heba Ismael , Bryan Allen , John M Buatti , Aikaterini Kotrotsou , Hongwei Li , Tobias Weiss , Michael Weller , Andrea Bink , Bertrand Pouymayou , Hassan F Shaykh , Joel Saltz , Prateek Prasanna , Sampurna Shrestha , Kartik M Mani , David Payne , Tahsin Kurc , Enrique Pelaez , Heydy Franco-Maldonado , Francis Loayza , Sebastian Quevedo , Pamela Guevara , Esteban Torche , Cristobal Mendoza , Franco Vera , Elvis Ríos , Eduardo López , Sergio A Velastin , Godwin Ogbole , Dotun Oyekunle , Olubunmi Odafe-Oyibotha , Babatunde Osobu , Mustapha Shu'aibu , Adeleye Dorcas , Mayowa Soneye , Farouk Dako , Amber L Simpson , Mohammad Hamghalam , Jacob J Peoples , Ricky Hu , Anh Tran , Danielle Cutler , Fabio Y Moraes , Michael A Boss , James Gimpel , Deepak Kattil Veettil , Kendall Schmidt , Brian Bialecki , Sailaja Marella , Cynthia Price , Lisa Cimino , Charles Apgar , Prashant Shah , Bjoern Menze , Jill S Barnholtz-Sloan , Jason Martin , Spyridon Bakas

Precise segmentation of brain tumors, particularly contrast-enhancing regions visible in post-contrast MRI (areas highlighted by contrast agent injection), is crucial for accurate clinical diagnosis and treatment planning but remains…

图像与视频处理 · 电气工程与系统科学 2025-06-13 Minye Shao , Zeyu Wang , Haoran Duan , Yawen Huang , Bing Zhai , Shizheng Wang , Yang Long , Yefeng Zheng

A key challenge in learning from multimodal biological data is missing modalities, where data from one or more modalities are absent for some patients. Existing approaches either exclude patients with missing modalities, impute missing…

机器学习 · 计算机科学 2026-05-19 Sina Tabakhi , Chen , Chen , Haiping Lu

Deep learning (DL) has been increasingly applied in medical imaging, however, it requires large amounts of data, which raises many challenges related to data privacy, storage, and transfer. Federated learning (FL) is a training paradigm…

计算机视觉与模式识别 · 计算机科学 2025-10-09 Jan Fiszer , Dominika Ciupek , Maciej Malawski

Foundation models (FMs) have demonstrated strong performance across diverse pathology tasks. While there are similarities in the pre-training objectives of FMs, there is still limited understanding of their complementarity, redundancy in…

计算机视觉与模式识别 · 计算机科学 2025-12-15 Brennan Flannery , Thomas DeSilvio , Jane Nguyen , Satish E. Viswanath

The advancements in data acquisition, storage, and processing techniques have resulted in the rapid growth of heterogeneous medical data. Integrating radiological scans, histopathology images, and molecular information with clinical data is…

机器学习 · 计算机科学 2023-12-25 Aakash Tripathi , Asim Waqas , Kavya Venkatesan , Yasin Yilmaz , Ghulam Rasool

Brain tumors analysis is important in timely diagnosis and effective treatment to cure patients. Tumor analysis is challenging because of tumor morphology like size, location, texture, and heteromorphic appearance in the medical images. In…

图像与视频处理 · 电气工程与系统科学 2022-02-14 Mirza Mumtaz Zahoor , Shahzad Ahmad Qureshi , Saddam Hussain Khan , Asifullah Khan

The task of data integration for multi-omics data has emerged as a powerful strategy to unravel the complex biological underpinnings of cancer. Recent advancements in graph neural networks (GNNs) offer an effective framework to model…

机器学习 · 计算机科学 2025-06-24 Payam Zohari , Mostafa Haghir Chehreghani

High-throughput omics profiling advancements have greatly enhanced cancer patient stratification. However, incomplete data in multi-omics integration presents a significant challenge, as traditional methods like sample exclusion or…

基因组学 · 定量生物学 2024-01-17 Shihao Ma , Andy G. X. Zeng , Benjamin Haibe-Kains , Anna Goldenberg , John E Dick , Bo Wang

Early detection of lung nodules is of great importance in lung cancer screening. Existing research recognizes the critical role played by CAD systems in early detection and diagnosis of lung nodules. However, many CAD systems, which are…

计算机视觉与模式识别 · 计算机科学 2018-10-18 Naji Khosravan , Ulas Bagci

Availability of large, diverse, and multi-national datasets is crucial for the development of effective and clinically applicable AI systems in the medical imaging domain. However, forming a global model by bringing these datasets together…

机器学习 · 计算机科学 2022-09-07 Ece Isik-Polat , Gorkem Polat , Altan Kocyigit , Alptekin Temizel

Building accurate and robust artificial intelligence systems for medical image assessment requires not only the research and design of advanced deep learning models but also the creation of large and curated sets of annotated training…

The time-consuming task of manual segmentation challenges routine systematic quantification of disease burden. Convolutional neural networks (CNNs) hold significant promise to reliably identify locations and boundaries of tumors from PET…

Breast cancer is a significant health concern affecting millions of women worldwide. Accurate survival risk stratification plays a crucial role in guiding personalised treatment decisions and improving patient outcomes. Here we present…

计算机视觉与模式识别 · 计算机科学 2024-07-02 Raktim Kumar Mondol , Ewan K. A. Millar , Arcot Sowmya , Erik Meijering

Functional magnetic resonance imaging (fMRI) data have become increasingly available and are useful for describing functional connectivity (FC), the relatedness of neuronal activity in regions of the brain. This FC of the brain provides…

机器学习 · 统计学 2020-10-14 Andrew DiLernia , Karina Quevedo , Jazmin Camchong , Kelvin Lim , Wei Pan , Lin Zhang

The analysis of multi-modality positron emission tomography and computed tomography (PET-CT) images for computer aided diagnosis applications requires combining the sensitivity of PET to detect abnormal regions with anatomical localization…

计算机视觉与模式识别 · 计算机科学 2019-10-29 Ashnil Kumar , Michael Fulham , Dagan Feng , Jinman Kim

Multi-modal magnetic resonance (MR) imaging provides great potential for diagnosing and analyzing brain gliomas. In clinical scenarios, common MR sequences such as T1, T2 and FLAIR can be obtained simultaneously in a single scanning…

图像与视频处理 · 电气工程与系统科学 2022-03-10 Ziqi Huang , Li Lin , Pujin Cheng , Linkai Peng , Xiaoying Tang

Semantic segmentation is an essential part of deep learning. In recent years, with the development of remote sensing big data, semantic segmentation has been increasingly used in remote sensing. Deep convolutional neural networks (DCNNs)…

计算机视觉与模式识别 · 计算机科学 2021-05-31 Xuan Yang , Shanshan Li , Zhengchao Chen , Jocelyn Chanussot , Xiuping Jia , Bing Zhang , Baipeng Li , Pan Chen