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Being able to measure time, whether directly or indirectly, is a significant advantage for an organism. It allows for the timely reaction to regular or predicted events, reducing the pressure for fast processing of sensory input. Thus,…

其他定量生物学 · 定量生物学 2019-06-19 Andrei D. Robu , Christoph Salge , Chrystopher L. Nehaniv , Daniel Polani

Along with his confirmation of the $e$-positivity of all cycle-chord graphs $\theta_{ab1}$, the third author conjectured the $e$-positivity of all theta graphs $\theta_{abc}$. In this paper, we establish the $e$-positivity of all clock…

组合数学 · 数学 2025-07-30 L. Chen , Y. T. He , David G. L. Wang

In this paper, we study the parameter synthesis problem for a class of parametric timed automata. The problem asks to construct the set of valuations of the parameters in the parametric timed automa- ton, referred to as the feasible region,…

形式语言与自动机理论 · 计算机科学 2018-09-24 Liyun Dai , Taolue Chen , Zhiming Liu , Bican Xia , Naijun Zhan , Kim G. Larsen

Periodic and semi periodic patterns are very common in nature. In this paper we introduce a topological toolbox aiming in detecting and quantifying periodicity. The presented technique is of a general nature and may be employed wherever…

代数拓扑 · 数学 2019-05-30 Paweł Dłotko , Wanling Qiu , Simon Rudkin

Oscillation synchronization phenomenon is widely observed in natural systems through frequency modulated signals, especially in biological neural networks. Frequency modulation is also one of most widely used technologies in engineering.…

最优化与控制 · 数学 2021-08-17 Zhiyong Chen

Fourier transform has become a basic tool for analyzing biological signals 1,2,3. Mostly a fast Fourier transform is computed for a finite sequence of data sample 4. This is the standard way apparatuses and modern computerized technology…

定量方法 · 定量生物学 2008-04-01 Silvia Solis Ortiz , Rafael G. Campos , Julian Felix , Octavio Obregon

We consider a periodic quantum clock based on cooperative resonance fluorescence at zero temperature. In the quantum case, this system has an exact steady state and the limit cycle appears in conditional quantum dynamics under homodyne…

量子物理 · 物理学 2025-03-18 Varinder Singh , Euijoon Kwon , G J Milburn

A new method is proposed to determine the time-frequency content of time-dependent signals consisting of multiple oscillatory components, with time-varying amplitudes and instantaneous frequencies. Numerical experiments as well as a…

统计理论 · 数学 2016-04-27 Ingrid Daubechies , Yi Wang , Hau-tieng Wu

Collective oscillation of cells in a population has been reported under diverse biological contexts and with vastly different molecular constructs. Could there be common principles similar to those that govern spontaneous oscillation in…

细胞行为 · 定量生物学 2019-07-08 Shou-Wen Wang , Lei-Han Tang

We study the periodic forced response of a system of two limit cycle oscillators that interact with each other via a time delayed coupling. Detailed bifurcation diagrams in the parameter space of the forcing amplitude and forcing frequency…

混沌动力学 · 物理学 2007-05-23 D. V. Ramana Reddy , A. Sen , G. L. Johnston

The analysis of chaotic signals with time-frequency methods is considered. For this purpose, two new transformations are presented which consist in the decomposition of a signal onto an orthogonal set of respectively linear and hyperbolic…

混沌动力学 · 物理学 2010-07-28 Benjamin Ricaud , Francoise Briolle , F. Clairet

Signal duration (e.g. the time scales over which an active signaling intermediate persists) is a key regulator of biological decisions in myriad contexts such as cell growth, proliferation, and developmental lineage commitments.…

分子网络 · 定量生物学 2008-02-20 Jason W. Locasale

This paper presents a method for synthesizing a reactive program which coordinates the actions of a group of other reactive programs, so that the combined system satisfies a temporal specification of its desired long-term behavior.…

编程语言 · 计算机科学 2019-11-12 Suguman Bansal , Kedar S. Namjoshi , Yaniv Sa'ar

Time series with multiple periodically correlated components is a complex problem with comparatively limited prior research. Most existing time series models are designed to accommodate simple periodically correlated components and tend to…

统计方法学 · 统计学 2025-09-29 Jie Yao , Kai Zhang , Eric Rose , Edward Valachovic

Time plays a crucial role in the intuitive understanding of the world around us. Within quantum mechanics, however, time is not usually treated as an observable quantity; it enters merely as a parameter in the laws of motion of physical…

量子物理 · 物理学 2015-06-05 Sandra Ranković , Yeong-Cherng Liang , Renato Renner

Theories unifying gravity and other interactions suggest the possibility of spatial and temporal variation of physical ``constants''. Accuracy achieved for the atomic optical frequency standards (optical clocks) approaches the level when…

原子物理 · 物理学 2009-02-05 V. A. Dzuba , V. V. Flambaum.

We demonstrate agreement between measurements and ab initio calculations of the frequency shifts caused by distributed cavity phase variations in the microwave cavity of a primary atomic fountain clock. Experimental verification of the…

量子物理 · 物理学 2011-04-05 Jocelyne Guéna , Ruoxin Li , Kurt Gibble , Sébastien Bize , André Clairon

Analyzing time series in the frequency domain enables the development of powerful tools for investigating the second-order characteristics of multivariate processes. Parameters like the spectral density matrix and its inverse, the coherence…

统计方法学 · 统计学 2024-01-19 Jonas Krampe , Efstathios Paparoditis

In this paper we present a novel method of atomic clock synchronisation combining digital error correction and phase tracking. Microwave broadcasts are used to measure the difference in frequency between a pair of atomic clocks. We use the…

仪器与探测器 · 物理学 2022-10-14 Adam Walton , Abigail McGlone , Benjamin Varcoe

A powerful tool is developed for the characterization of chaotic signals. The approach is based on the symbolic encoding of time series (according to their ordinal patterns) combined with the ensuing characterization of the corresponding…

混沌动力学 · 物理学 2017-04-12 Antonio Politi