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Phylogenetic networks generalise phylogenetic trees and allow for the accurate representation of the evolutionary history of a set of present-day species whose past includes reticulate events such as hybridisation and lateral gene transfer.…

种群与进化 · 定量生物学 2018-09-05 Joan Carles Pons , Charles Semple , Mike Steel

We study protected nodes in various classes of random rooted trees by putting them in the general context of fringe subtrees introduced by Aldous (1991). Several types of random trees are considered: simply generated trees (or conditioned…

概率论 · 数学 2013-10-03 Luc Devroye , Svante Janson

Representations of Spin groups and Clifford algebras derived from the structure of qubit trees are introduced in this work. For ternary trees the construction is more general and reduction to binary trees is formally defined by deletion of…

量子物理 · 物理学 2022-12-06 Alexander Yu. Vlasov

We obtain a closed-form expression for the Wiener index of binomial trees. We outline efficient algorithms for computing the Wiener indices of Fibonacci and binary Fibonacci trees.

离散数学 · 计算机科学 2009-10-26 K. Viswanathan Iyer , K. R. Uday Kumar Reddy

We study the detection error probability associated with a balanced binary relay tree, where the leaves of the tree correspond to $N$ identical and independent detectors. The root of the tree represents a fusion center that makes the…

信息论 · 计算机科学 2011-05-09 Zhenliang Zhang , Ali Pezeshki , William Moran , Stephen D. Howard , Edwin K. P. Chong

We compare three basic kinds of discrete mathematical models used to portray phylogenetic relationships among species and higher taxa: phylogenetic trees, Hennig trees and Nelson cladograms. All three models are trees, as that term is…

种群与进化 · 定量生物学 2011-10-05 Jeremy L. Martin , E. O. Wiley

We reduce the problem of constructing asymptotically good tree codes to the construction of triangular totally nonsingular matrices over fields with polynomially many elements. We show a connection of this problem to Birkhoff interpolation…

信息论 · 计算机科学 2015-08-28 Pavel Pudlák

Scattering equations for tree-level amplitudes are viewed in the context of string theory. As a result of the comparison we are led to define a new dual model which coincides with string theory in both the small and large $\alpha'$ limit,…

高能物理 - 理论 · 物理学 2015-06-19 N. E. J Bjerrum-Bohr , P. H. Damgaard , P. Tourkine , P. Vanhove

We formulate necessary and sufficient conditions for an arbitrary discrete probability distribution to factor according to an undirected graphical model, or a log-linear model, or other more general exponential models. This result…

人工智能 · 计算机科学 2013-01-07 Dan Geiger , Christopher Meek , Bernd Sturmfels

We investigate tree-automatic well-founded trees. Using Delhomme's decomposition technique for tree-automatic structures, we show that the (ordinal) rank of a tree-automatic well-founded tree is strictly below omega^omega. Moreover, we make…

计算机科学中的逻辑 · 计算机科学 2015-07-01 Martin Huschenbett , Alexander Kartzow , Jiamou Liu , Markus Lohrey

This paper addresses several structural aspects of the insertion-elimination algebra, a Lie algebra that can be realized in terms of tree-inserting and tree-eliminating operations on the set of rooted trees. In particular, we determine the…

环与代数 · 数学 2016-06-22 Matthew Ondrus , Emilie Wiesner

To any rooted tree, we associate a sequence of numbers that we call the logarithmic factorials of the tree. This provides a generalization of Bhargava's factorials to a natural combinatorial setting suitable for studying questions around…

组合数学 · 数学 2016-11-08 Omid Amini

This extended abstract is dedicated to the analysis of the height of non-plane unlabelled rooted binary trees. The height of such a tree chosen uniformly among those of size $n$ is proved to have a limiting theta distribution, both in a…

组合数学 · 数学 2008-07-16 Nicolas Broutin , Philippe Flajolet

Let $\mathcal{B}$ be the set of rooted trees containing an infinite binary subtree starting at the root. This set satisfies the metaproperty that a tree belongs to it if and only if its root has children $u$ and $v$ such that the subtrees…

概率论 · 数学 2020-06-11 Tobias Johnson , Moumanti Podder , Fiona Skerman

Cambrian trees are oriented and labeled trees which fulfill local conditions around each node generalizing the conditions for classical binary search trees. Based on the bijective correspondence between signed permutations and leveled…

组合数学 · 数学 2023-11-14 Grégory Chatel , Vincent Pilaud

We present two effective tools for computing the positive tropicalization of algebraic varieties. First, we outline conditions under which the initial ideal can be used to compute the positive tropicalization, offering a real analogue to…

代数几何 · 数学 2025-07-31 Kemal Rose , Máté L. Telek

One of the main virtues of trees is to represent formal solutions of various functional equations which can be cast in the form of fixed point problems. Basic examples include differential equations and functional (Lagrange) inversion in…

组合数学 · 数学 2013-02-12 Florent Hivert , Jean-Christophe Novelli , Jean-Yves Thibon

We introduce a monoid structure on the set of binary search trees, by a process very similar to the construction of the plactic monoid, the Robinson-Schensted insertion being replaced by the binary search tree insertion. This leads to a new…

组合数学 · 数学 2013-02-12 F. Hivert , J. -C. Novelli , J. -Y. Thibon

Pairwise ordered tree alignment are combinatorial objects that appear in RNA secondary structure comparison. However, the usual representation of tree alignments as supertrees is ambiguous, i.e. two distinct supertrees may induce identical…

定量方法 · 定量生物学 2016-03-08 Cedric Chauve , Julien Courtiel , Yann Ponty

We present a simple combinatorial proof of Postnikov's hook length formula for binary trees.

组合数学 · 数学 2007-05-23 William Y. C. Chen , Laura L. M. Yang