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The field of connectomics has recently produced neuron wiring diagrams from relatively large brain regions from multiple animals. Most of these neural reconstructions were computed from isotropic (e.g., FIBSEM) or near isotropic (e.g.,…

We introduce a new machine learning approach for image segmentation that uses a neural network to model the conditional energy of a segmentation given an image. Our approach, combinatorial energy learning for image segmentation (CELIS)…

计算机视觉与模式识别 · 计算机科学 2016-09-27 Jeremy Maitin-Shepard , Viren Jain , Michal Januszewski , Peter Li , Pieter Abbeel

Segmentation of lymphoma lesions is challenging due to their varied sizes and locations in whole-body PET scans. This work presents a fully-automated segmentation technique using a multi-center dataset of diffuse large B-cell lymphoma…

Deep learning has quickly become the weapon of choice for brain lesion segmentation. However, few existing algorithms pre-configure any biological context of their chosen segmentation tissues, and instead rely on the neural network's…

计算机视觉与模式识别 · 计算机科学 2017-09-12 Andrew Beers , Ken Chang , James Brown , Emmett Sartor , CP Mammen , Elizabeth Gerstner , Bruce Rosen , Jayashree Kalpathy-Cramer

Deep learning techniques have shown their success in medical image segmentation since they are easy to manipulate and robust to various types of datasets. The commonly used loss functions in the deep segmentation task are pixel-wise loss…

图像与视频处理 · 电气工程与系统科学 2022-10-10 Yuan Lan , Yang Xiang , Luchan Zhang

With the introduction of fully convolutional neural networks, deep learning has raised the benchmark for medical image segmentation on both speed and accuracy, and different networks have been proposed for 2D and 3D segmentation with…

计算机视觉与模式识别 · 计算机科学 2018-09-26 Ken C. L. Wong , Mehdi Moradi , Hui Tang , Tanveer Syeda-Mahmood

The task of automatically segmenting 3-D surfaces representing boundaries of objects is important for quantitative analysis of volumetric images, and plays a vital role in biomedical image analysis. Recently, graph-based methods with a…

计算机视觉与模式识别 · 计算机科学 2018-01-10 Abhay Shah , Michael Abramoff , Xiaodong Wu

We aim to improve segmentation through the use of machine learning tools during region agglomeration. We propose an active learning approach for performing hierarchical agglomerative segmentation from superpixels. Our method combines…

计算机视觉与模式识别 · 计算机科学 2015-03-13 Juan Nunez-Iglesias , Ryan Kennedy , Toufiq Parag , Jianbo Shi , Dmitri B. Chklovskii

We show dense voxel embeddings learned via deep metric learning can be employed to produce a highly accurate segmentation of neurons from 3D electron microscopy images. A "metric graph" on a set of edges between voxels is constructed from…

计算机视觉与模式识别 · 计算机科学 2021-08-09 Kisuk Lee , Ran Lu , Kyle Luther , H. Sebastian Seung

We propose a novel locally adaptive learning estimator for enhancing the inter- and intra- discriminative capabilities of Deep Neural Networks, which can be used as improved loss layer for semantic image segmentation tasks. Most loss layers…

计算机视觉与模式识别 · 计算机科学 2018-04-17 Jinjiang Guo , Pengyuan Ren , Aiguo Gu , Jian Xu , Weixin Wu

Fully convolutional deep neural networks have been asserted to be fast and precise frameworks with great potential in image segmentation. One of the major challenges in training such networks raises when data is unbalanced, which is common…

计算机视觉与模式识别 · 计算机科学 2018-12-17 Seyed Raein Hashemi , Seyed Sadegh Mohseni Salehi , Deniz Erdogmus , Sanjay P. Prabhu , Simon K. Warfield , Ali Gholipour

Brain tumor diagnosis is a challenging task for clinicians in the modern world. Among the major reasons for cancer-related death is the brain tumor. Gliomas, a category of central nervous system (CNS) tumors, encompass diverse subregions.…

图像与视频处理 · 电气工程与系统科学 2026-03-10 Kiranmayee Janardhan , Christy Bobby T

This paper reports Deep LOGISMOS approach to 3D tumor segmentation by incorporating boundary information derived from deep contextual learning to LOGISMOS - layered optimal graph image segmentation of multiple objects and surfaces. Accurate…

计算机视觉与模式识别 · 计算机科学 2018-01-29 Zhihui Guo , Ling Zhang , Le Lu , Mohammadhadi Bagheri , Ronald M. Summers , Milan Sonka , Jianhua Yao

Segmentation has been a major task in neuroimaging. A large number of automated methods have been developed for segmenting healthy and diseased brain tissues. In recent years, deep learning techniques have attracted a lot of attention as a…

图像与视频处理 · 电气工程与系统科学 2019-07-05 Jimit Doshi , Guray Erus , Mohamad Habes , Christos Davatzikos

Automated sample preparation and electron microscopy enables acquisition of very large image data sets. These technical advances are of special importance to the field of neuroanatomy, as 3D reconstructions of neuronal processes at the nm…

Deep distance metric learning (DDML), which is proposed to learn image similarity metrics in an end-to-end manner based on the convolution neural network, has achieved encouraging results in many computer vision tasks.$L2$-normalization in…

计算机视觉与模式识别 · 计算机科学 2018-03-29 Xuefei Zhe , Shifeng Chen , Hong Yan

Accurate segmentation of different sub-regions of gliomas including peritumoral edema, necrotic core, enhancing and non-enhancing tumor core from multimodal MRI scans has important clinical relevance in diagnosis, prognosis and treatment of…

计算机视觉与模式识别 · 计算机科学 2018-12-05 Xue Feng , Nicholas Tustison , Craig Meyer

In the deep metric learning approach to image segmentation, a convolutional net densely generates feature vectors at the pixels of an image. Pairs of feature vectors are trained to be similar or different, depending on whether the…

计算机视觉与模式识别 · 计算机科学 2019-02-04 Kyle Luther , H. Sebastian Seung

The diagnosis of brain cancer relies heavily on medical imaging techniques, with MRI being the most commonly used. It is necessary to perform automatic segmentation of brain tumors on MRI images. This project intends to build an MRI…

图像与视频处理 · 电气工程与系统科学 2024-06-28 Yuxiang Hu , Haowei Yang , Ting Xu , Shuyao He , Jiajie Yuan , Haozhang Deng

Introducing explicit constraints on the structural predictions has been an effective way to improve the performance of semantic segmentation models. Existing methods are mainly based on insufficient hand-crafted rules that only partially…

计算机视觉与模式识别 · 计算机科学 2019-07-30 Boxi Wu , Shuai Zhao , Wenqing Chu , Zheng Yang , Deng Cai
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