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In the Palindrome Problem one tries to find all palindromes (palindromic substrings) in a given string. A palindrome is defined as a string which reads forwards the same as backwards, e.g., the string "racecar". A related problem is the…

数据结构与算法 · 计算机科学 2016-01-29 Petra Berenbrink , Funda Ergün , Frederik Mallmann-Trenn , Erfan Sadeqi Azer

Described are two algorithms to find long approximate palindromes in a string, for example a DNA sequence. A simple algorithm requires O(n)-space and almost always runs in $O(k.n)$-time where n is the length of the string and k is the…

数据结构与算法 · 计算机科学 2007-05-23 L. Allison

We consider computing a longest palindrome in the streaming model, where the symbols arrive one-by-one and we do not have random access to the input. While computing the answer exactly using sublinear space is not possible in such a…

数据结构与算法 · 计算机科学 2016-10-12 Paweł Gawrychowski , Oleg Merkurev , Arseny M. Shur , Przemysław Uznański

The palindrome pattern matching (pal-matching) is a kind of generalized pattern matching, in which two strings $x$ and $y$ of same length are considered to match (pal-match) if they have the same palindromic structures, i.e., for any…

数据结构与算法 · 计算机科学 2023-04-17 Shinya Nagashita , Tomohiro I

Palindromes are strings that read the same forward and backward. Problems of computing palindromic structures in strings have been studied for many years with a motivation of their application to biology. The longest palindrome problem is…

数据结构与算法 · 计算机科学 2023-06-21 Kazuki Mitani , Takuya Mieno , Kazuhisa Seto , Takashi Horiyama

Palindromes are strings that read the same forward and backward. The computation of palindromic structures within strings is a fundamental problem in string algorithms, being motivated by potential applications in formal language theory and…

数据结构与算法 · 计算机科学 2026-05-15 Takuya Mieno , Tomohiro I

We consider computing the longest palindrome in a text of length $n$ in the streaming model, where the characters arrive one-by-one, and we do not have random access to the input. While computing the answer exactly using sublinear memory is…

数据结构与算法 · 计算机科学 2016-04-08 Paweł Gawrychowski , Przemysław Uznański

The {\em longest common subsequence (LCS)} problem is a classic and well-studied problem in computer science. Palindrome is a word which reads the same forward as it does backward. The {\em longest common palindromic subsequence (LCPS)}…

数据结构与算法 · 计算机科学 2011-10-25 Shihabur Rahman Chowdhury , Md. Mahbubul Hasan , Sumaiya Iqbal , M. Sohel Rahman

Analyzing patterns in data streams generated by network traffic, sensor networks, or satellite feeds is a challenge for systems in which the available storage is limited. In addition, real data is noisy, which makes designing data stream…

数据结构与算法 · 计算机科学 2017-11-15 Elena Grigorescu , Erfan Sadeqi Azer , Samson Zhou

Identifying palindromes in sequences has been an interesting line of research in combinatorics on words and also in computational biology, after the discovery of the relation of palindromes in the DNA sequence with the HIV virus. Efficient…

数据结构与算法 · 计算机科学 2017-03-28 Michał Adamczyk , Mai Alzamel , Panagiotis Charalampopoulos , Costas S. Iliopoulos , Jakub Radoszewski

We consider the problem of computing distance between a pattern of length $n$ and all $n$-length subwords of a text in the streaming model. In the streaming setting, only the Hamming distance ($L_0$) has been studied. It is known that…

数据结构与算法 · 计算机科学 2020-11-10 Tatiana Starikovskaya , Michal Svagerka , Przemysław Uznański

We consider the problem of computing a $(1+\epsilon)$-approximation of the Hamming distance between a pattern of length $n$ and successive substrings of a stream. We first look at the one-way randomised communication complexity of this…

数据结构与算法 · 计算机科学 2016-02-24 Raphael Clifford , Tatiana Starikovskaya

This paper extends the problem of 2-dimensional palindrome search into the area of approximate matching. Using the Hamming distance as the measure, we search for 2D palindromes that allow up to $k$ mismatches. We consider two different…

数据结构与算法 · 计算机科学 2020-02-27 Dina Sokol

In the $k$-mismatch problem we are given a pattern of length $n$ and a text and must find all locations where the Hamming distance between the pattern and the text is at most $k$. A series of recent breakthroughs have resulted in an…

数据结构与算法 · 计算机科学 2021-06-22 Paweł Gawrychowski , Tatiana Starikovskaya

We introduce a novel definition of approximate palindromes in strings, and provide an algorithm to find all maximal approximate palindromes in a string with up to $k$ errors. Our definition is based on the usual edit operations of…

数据结构与算法 · 计算机科学 2007-05-23 A. H. L. Porto , V. C. Barbosa

A palindrome is a string that reads the same forward and backward. A palindromic substring $P$ of a string $S$ is called a shortest unique palindromic substring ($\mathit{SUPS}$) for an interval $[x, y]$ in $S$, if $P$ occurs exactly once…

数据结构与算法 · 计算机科学 2017-07-05 Yuto Nakashima , Hiroe Inoue , Takuya Mieno , Shunsuke Inenaga , Hideo Bannai , Masayuki Takeda

Approximating the length of the longest increasing sequence (LIS) of an array is a well-studied problem. We study this problem in the data stream model, where the algorithm is allowed to make a single left-to-right pass through the array…

数据结构与算法 · 计算机科学 2013-04-16 Michael Saks , C. Seshadhri

We revisit the complexity of one of the most basic problems in pattern matching. In the k-mismatch problem we must compute the Hamming distance between a pattern of length m and every m-length substring of a text of length n, as long as…

数据结构与算法 · 计算机科学 2015-08-28 Raphaël Clifford , Allyx Fontaine , Ely Porat , Benjamin Sach , Tatiana Starikovskaya

We consider the streaming complexity of a fundamental task in approximate pattern matching: the $k$-mismatch problem. It asks to compute Hamming distances between a pattern of length $n$ and all length-$n$ substrings of a text for which the…

数据结构与算法 · 计算机科学 2018-04-10 Raphaël Clifford , Tomasz Kociumaka , Ely Porat

We present a new streaming algorithm for the $k$-Mismatch problem, one of the most basic problems in pattern matching. Given a pattern and a text, the task is to find all substrings of the text that are at the Hamming distance at most $k$…

数据结构与算法 · 计算机科学 2019-04-24 Jakub Radoszewski , Tatiana Starikovskaya
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