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Behavioral phenotyping of genetic animal models currently requires labor-intensive manual feature engineering that limits reproducibility and scalability. We present GEESE, an end-to-end deep learning framework that learns behavioral…

机器学习 · 计算机科学 2026-05-26 Yiran Ding , Yuen Gao , Chunqi Qian , Zijun Cui

Modern deep learning systems rely on (a) a hand-tuned neural network topology, (b) massive amounts of labeled training data, and (c) extensive training over large-scale compute resources to build a system that can perform efficient image…

神经与进化计算 · 计算机科学 2018-09-17 Ananda Samajdar , Parth Mannan , Kartikay Garg , Tushar Krishna

Generative Adversarial Networks (GANs) are powerful generative models that achieved strong results, mainly in the image domain. However, the training of GANs is not trivial, presenting some challenges tackled by different strategies.…

神经与进化计算 · 计算机科学 2021-02-26 Victor Costa , Nuno Lourenço , João Correia , Penousal Machado

Symbolic regression is the task of identifying a mathematical expression that best fits a provided dataset of input and output values. Due to the richness of the space of mathematical expressions, symbolic regression is generally a…

机器学习 · 计算机科学 2021-06-29 Mojtaba Valipour , Bowen You , Maysum Panju , Ali Ghodsi

We discuss how to use a Genetic Regulatory Network as an evolutionary representation to solve a typical GP reinforcement problem, the pole balancing. The network is a modified version of an Artificial Regulatory Network proposed a few years…

人工智能 · 计算机科学 2010-05-20 Miguel Nicolau , Marc Schoenauer , W. Banzhaf

Model merging allows combining the capabilities of existing models into a new one - post hoc, without additional training. This has made it increasingly popular thanks to its low cost and the availability of libraries that support merging…

机器学习 · 计算机科学 2025-08-25 Adrian Robert Minut , Tommaso Mencattini , Andrea Santilli , Donato Crisostomi , Emanuele Rodolà

Evolutionary Game Theory (EGT) simulations are used to model populations undergoing biological and cultural evolution in a range of fields, from biology to economics to linguistics. In this paper we present DyPy, an open source Python…

种群与进化 · 定量生物学 2020-07-29 Anjalika Nande , Andrew Ferdowsian , Eric Lubin , Erez Yoeli , Martin Nowak

State-of-the-art methods for data-driven modelling of non-linear dynamical systems typically involve interactions with an expert user. In order to partially automate the process of modelling physical systems from data, many EA-based…

系统与控制 · 计算机科学 2020-05-11 Dhruv Khandelwal , Maarten Schoukens , Roland Tóth

Sentiment analysis consists of evaluating opinions or statements from the analysis of text. Among the methods used to estimate the degree in which a text expresses a given sentiment, are those based on Gaussian Processes. However,…

计算与语言 · 计算机科学 2019-10-15 Ibai Roman , Alexander Mendiburu , Roberto Santana , Jose A. Lozano

Differential Evolution (DE) is a widely used evolutionary algorithm for black-box optimization problems. However, in modern DE implementations, a major challenge lies in the limited population diversity caused by the fixed population size…

神经与进化计算 · 计算机科学 2025-06-18 Tomofumi Kitamura , Alex Fukunaga

Nowadays genetic algorithm (GA) is greatly used in engineering pedagogy as an adaptive technique to learn and solve complex problems and issues. It is a meta-heuristic approach that is used to solve hybrid computation challenges. GA…

其他计算机科学 · 计算机科学 2020-07-27 Tanweer Alam , Shamimul Qamar , Amit Dixit , Mohamed Benaida

New powerful tools for tackling life science problems have been created by recent advances in machine learning. The purpose of the paper is to discuss the potential advantages of gene recommendation performed by artificial intelligence…

定量方法 · 定量生物学 2023-03-23 Daniele Brambilla , Davide Maria Giacomini , Luca Muscarnera , Andrea Mazzoleni

Deploying machine learning models into sensitive domains in our society requires these models to be explainable. Genetic Programming (GP) can offer a way to evolve inherently interpretable expressions. GP-GOMEA is a form of GP that has been…

神经与进化计算 · 计算机科学 2024-02-16 Thalea Schlender , Mafalda Malafaia , Tanja Alderliesten , Peter A. N. Bosman

We introduce Genetic AI, a novel method for multi-objective optimization without external parameters or predefined weights. The method can be applied to all problems that can be formulated in matrix form and allows for a data-less training…

神经与进化计算 · 计算机科学 2025-05-09 Philipp Wissgott

Taxonomy is formulated as directed acyclic concepts graphs or trees that support many downstream tasks. Many new coming concepts need to be added to an existing taxonomy. The traditional taxonomy expansion task aims only at finding the best…

人工智能 · 计算机科学 2023-03-28 Zhouhong Gu , Sihang Jiang , Jingping Liu , Yanghua Xiao , Hongwei Feng , Zhixu Li , Jiaqing Liang , Jian Zhong

The coverage and composition of the pretraining data significantly impacts the generalization ability of Large Language Models (LLMs). Despite its importance, recent LLMs still rely on heuristics and trial and error to increase or reduce…

机器学习 · 计算机科学 2024-02-06 Simin Fan , Matteo Pagliardini , Martin Jaggi

Reinforcement Learning (RL) has achieved impressive performance in many complex environments due to the integration with Deep Neural Networks (DNNs). At the same time, Genetic Algorithms (GAs), often seen as a competing approach to RL, had…

机器学习 · 计算机科学 2020-07-08 Cristian Bodnar , Ben Day , Pietro Lió

Automatic postediting (APE) is an automated process to refine a given machine translation (MT). Recent findings present that existing APE systems are not good at handling high-quality MTs even for a language pair with abundant data…

计算与语言 · 计算机科学 2023-06-21 Baikjin Jung , Myungji Lee , Jong-Hyeok Lee , Yunsu Kim

Ensembl's human non-coding and protein coding genes are used to automatically find DNA pattern motifs. The Backus-Naur form (BNF) grammar for regular expressions (RE) is used by genetic programming to ensure the generated strings are legal.…

生物大分子 · 定量生物学 2010-02-02 W. B. Langdon , Olivia Sanchez Graillet , A. P. Harrison

The availability of a large number of assembled genomes opens the way to study the evolution of syntenic character within a phylogenetic context. The DeCo algorithm, recently introduced by B{\'e}rard et al. allows the computation of…

定量方法 · 定量生物学 2015-03-20 Ashok Rajaraman , Cedric Chauve , Yann Ponty