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To monitor conformational changes of individual membrane transporters in liposomes in real time, we attach two fluorophores to selected domains of a protein. Sequential distance changes between the dyes are recorded and analyzed by Forster…

定量方法 · 定量生物学 2015-06-11 Bertram Su , Monika G. Dueser , Nawid Zarrabi , Thomas Heitkamp , Ilka Starke , Michael Börsch

Conformational changes of individual fluorescently labeled proteins can be followed in solution using a confocal microscope. Two fluorophores attached to selected domains of the protein report fluctuating conformations. Based on F\"orster…

定量方法 · 定量生物学 2015-06-12 Nawid Zarrabi , Caterina Clausen , Monika G. Dueser , Michael Boersch

Observation times of freely diffusing single molecules in solution are limited by the photophysics of the attached fluorescence markers and by a small observation volume in the femtolitre range that is required for a sufficient…

FoF1-ATP synthase is the essential membrane enzyme maintaining the cellular level of adenosine triphosphate (ATP) and comprises two rotary motors. We measure subunit rotation in FoF1-ATP synthase by intramolecular Foerster resonance energy…

定量方法 · 定量生物学 2015-05-27 Torsten Rendler , Marc Renz , Eva Hammann , Stefan Ernst , Nawid Zarrabi , Michael Boersch

Anti-Brownian traps confine single particles in free solution by closed-loop feedback forces that directly counteract Brownian motion. The extended-duration measurement of trapped objects allows detailed characterization of photophysical…

仪器与探测器 · 物理学 2023-05-15 Allison H. Squires , Abhijit A. Lavania , Peter D. Dahlberg , W. E. Moerner

FoF1-ATP synthase is the membrane protein catalyzing the synthesis of the 'biological energy currency' adenosine triphosphate (ATP). The enzyme uses internal subunit rotation for the mechanochemical conversion of a proton motive force to…

生物大分子 · 定量生物学 2015-06-15 Thomas Heitkamp , Hendrik Sielaff , Anja Korn , Marc Renz , Nawid Zarrabi , Michael Boersch

FoF1-ATP synthase catalyzes the synthesis of adenosine triphosphate (ATP). The F1 portion can be stripped from the membrane-embedded Fo portion of the enzyme. F1 acts as an ATP hydrolyzing enzyme, and ATP hydrolysis is associated with…

生物大分子 · 定量生物学 2018-02-14 Hendrik Sielaff , Thomas Heitkamp , Andrea Zappe , Nawid Zarrabi , Michael Boersch

Single-molecule F\"orster resonance energy transfer (smFRET) of molecular motors provides transformative insights into their dynamics and conformational changes both at high temporal and spatial resolution simultaneously. However, a key…

In this article we explore the dynamics of a Brownian particle in a feedback-free dynamic thermophoretic trap. The trap contains a focused laser beam heating a circular gold structure locally and creating a repulsive thermal potential for a…

软凝聚态物质 · 物理学 2017-09-13 Marco Braun , Alois Würger , Frank Cichos

FoF1-ATP synthases are ubiquitous membrane-bound, rotary motor enzymes that can catalyze ATP synthesis and hydrolysis. Their enzyme kinetics are controlled by internal subunit rotation, by substrate and product concentrations, by mechanical…

生物大分子 · 定量生物学 2021-06-29 Thomas Heitkamp , Michael Börsch

F1-ATPase is the soluble portion of the membrane-embedded enzyme FoF1-ATP synthase that catalyzes the production of adenosine triphosphate in eukaryotic and eubacterial cells. In reverse, the F1 part can also hydrolyze ATP quickly at three…

生物大分子 · 定量生物学 2015-06-18 Samuel D. Bockenhauer , Thomas M. Duncan , W. E. Moerner , Michael Boersch

A nanofiber-based optical tweezer is demonstrated. Trapping is achieved by combining attractive near-field optical gradient forces with repulsive electrostatic forces. Silica-coated Fe$_2$O$_3$ nanospheres of 300 diameter are trapped as…

光学 · 物理学 2015-06-17 Jon D. Swaim , Joachim Knittel , Warwick P. Bowen

Radiofrequency (RF) traps enable highly controlled interactions between charged particles, including reactions between cold molecular ions, sympathetic cooling of one ion species with another, and quantum logic spectroscopy. However, the…

量子物理 · 物理学 2025-11-27 Dmitry S. Bykov , Lorenzo Dania , Florian Goschin , Tracy E. Northup

Enzymes are cellular protein machines using a variety of conformational changes to power fast biochemical catalysis. Our goal is to exploit the single-spin properties of the luminescent NV (nitrogen-vacancy) center in nanodiamonds to reveal…

定量方法 · 定量生物学 2024-01-25 Ivan Perez , Anke Krueger , Joerg Wrachtrup , Fedor Jelezko , Michael Börsch

We analyze the dynamics of Brownian ratchets in a confined environment. The motion of the particles is described by a Fick-Jakobs kinetic equation in which the presence of boundaries is modeled by means of an entropic potential. The cases…

软凝聚态物质 · 物理学 2013-05-23 Paolo Malgaretti , Ignacio Pagonabarraga , J. Miguel Rubi

Forces on a nanoparticle in an optical trap are analysed. Brownian motion is found to be one of the major challenges to trap a nanoparticle. Accordingly, suitable spatial electric field distribution of laser beam is suggested to enhance the…

The ability to control the location of nanoscale objects in liquids is essential for fundamental and applied research from nanofluidics to molecular biology. To overcome their random Brownian motion, the electrostatic fluidic trap creates…

In this Letter we show how a single beam optical trap offers the means for three-dimensional manipulation of semiconductor nanorods in solution. Furthermore rotation of the direction of the electric field provides control over the…

生物物理 · 物理学 2012-03-06 C. Robin Head , Elena Kammann , Marco Zanella , Liberato Manna , Pavlos G. Lagoudakis

Brownian ratchet has emerged as a promising tool for understanding motion mechanism of molecules and proteins, and dynamically manipulating particles in non-equilibrium thermodynamics state. Here, we propose and experimentally demonstrate a…

光学 · 物理学 2021-06-02 Xionggui Tang , Yanhua Xu

Biomolecules exhibit dynamic conformations critical to their functions, yet observing these processes at the single-molecule level under native conditions remains a formidable challenge. While surface immobilization has been widely used to…

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