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We investigate the dynamics of an active gel of bundled microtubules that is driven by clusters of kinesin molecular motors. Upon the addition of ATP, the coordinated action of thousands of molecular motors drives the gel to a highly…

软凝聚态物质 · 物理学 2015-06-23 Gil Henkin , Stephen J. DeCamp , Daniel TN Chen , Tim Sanchez , Zvonimir Dogic

We investigated the actuation performances of anisotropic gels driven by mechanical and chemical stimuli, in terms of both deformation processes and stroke--curves, and distinguished between the fast response of gels before diffusion starts…

软凝聚态物质 · 物理学 2016-12-21 Paola Nardinocchi , Luciano Teresi

This work investigates the effects of tangent polar activity on the conformational and dynamic properties of entangled polymer melts through Langevin molecular dynamics simulations. We examine systems composed of all self-propelled,…

软凝聚态物质 · 物理学 2024-11-19 Javier Oller-Iscar , Andrés R. Tejedor , Marisol Ripoll , Jorge Ramírez

We consider the derivation and numerical solution of the flow of passive and active polar liquid crystals, whose molecular orientation is subjected to a tangential anchoring on an evolving curved surface. The underlying passive model is a…

计算物理 · 物理学 2019-01-18 Ingo Nitschke , Sebastian Reuther , Axel Voigt

Living systems often exhibit internal driving: active, molecular processes drive nonequilibrium phenomena such as metabolism or migration. Active gels constitute a fascinating class of internally driven matter, where molecular motors exert…

Reconstituted filamentous actin networks with myosin motor proteins form active gels, in which motor proteins generate forces that drive the network far from equilibrium. This motor activity can also strongly affect the network elasticity;…

软凝聚态物质 · 物理学 2010-09-21 C. P. Broedersz , F. C. MacKintosh

Using a minimal hydrodynamic model, we theoretically and computationally study active gels in straight and annular two-dimensional channels subject to an externally imposed shear. The gels are isotropic in the absence of externally- or…

软凝聚态物质 · 物理学 2023-07-25 Wan Luo , Aparna Baskaran , Robert A. Pelcovits , Thomas R. Powers

Cells accomplish diverse functions using the same molecular building blocks, from setting up cytoplasmic flows to generating mechanical forces. In particular, transitions between these non-equilibrium states are triggered by regulating the…

软凝聚态物质 · 物理学 2022-01-03 Bibi Najma , Minu Varghese , Lev Tsidilkovski , Linnea Lemma , Aparna Baskaran , Guillaume Duclos

How thousands of microtubules and molecular motors self-organize into spindles remains poorly understood. By combining static, nanometer-resolution, large-scale electron tomography reconstructions and dynamic, optical-resolution, polarized…

We discuss a class of models for particulate gels in which the particle contacts are described by an effective interaction combining a two-body attraction and a three-body angular repulsion. Using molecular dynamics, we show how varying the…

软凝聚态物质 · 物理学 2021-08-05 Minaspi Bantawa , Wayan A. Fontaine-Seiler , Peter D. Olmsted , Emanuela Del Gado

When supercooled, liquids viscosity increases dramatically as the glass transition temperature is approached. While the physical origin of this behavior is still not understood, it is now well established that the addition of a few…

软凝聚态物质 · 物理学 2024-11-25 Victor Teboul

We use computer simulations to study the morphology and rheological properties of a bidimensional emulsion resulting from a mixture of a passive isotropic fluid and an active contractile polar gel, in the presence of a surfactant that…

软凝聚态物质 · 物理学 2020-10-30 L. N. Carenza , G. Gonnella , A. Lamura , D. Marenduzzo , G. Negro , A. Tiribocchi

Spatially localised defect structures emerge spontaneously in a hydrodynamic description of an active polar fluid comprising polar 'actin' filaments and 'myosin' motor proteins that (un)bind to filaments and exert active contractile…

生物物理 · 物理学 2017-02-22 Kabir Husain , Madan Rao

Developing tissues need to pattern themselves in space and time. A prevalent mechanism to achieve this are pulsatile active stresses generated by the actin cytoskeleton. Active gel theory is a powerful tool to model the dynamics of…

生物物理 · 物理学 2023-02-21 Eloy Merlijn de Kinkelder , Elisabeth Fischer-Friedrich , Sebastian Aland

A phenomenological description for active bundles of polar filaments is presented. The activity of the bundle results from crosslinks, that induce relative displacements between the aligned filaments. Our generic description is based on…

统计力学 · 物理学 2009-11-07 Karsten Kruse , Frank Julicher

Biological cells can actively tune their intracellular architecture according to their overall shape. Here we explore the rheological implication of such coupling in a minimal model of a dense cellular material where each cell exerts an…

软凝聚态物质 · 物理学 2022-04-13 Shao-Zhen Lin , Matthias Merkel , Jean-François Rupprecht

In the presence of ATP, molecular motors generate active force dipoles that drive suspensions of protein filaments far from thermodynamic equilibrium, leading to exotic dynamics and pattern formation. Microscopic modelling can help to…

生物物理 · 物理学 2015-06-17 D. A. Head , W. J. Briels , G. Gompper

Migration of animal cells is based on the interplay between actin polymerization at the front, adhesion along the cell-substrate interface, and actomyosin contractility at the back. Active gel theory has been used before to demonstrate that…

细胞行为 · 定量生物学 2024-12-11 Valentin Wössner , Oliver M. Drozdowski , Falko Ziebert , Ulrich S. Schwarz

Cellular cortex, which is a highly viscous thin cytoplasmic layer just below the cell membrane, controls the cell's mechanical properties, which can be characterized by a hydrodynamic length scale $\ell$. Cells actively regulate $\ell$ via…

生物物理 · 物理学 2018-06-08 Saroj Kumar Nandi

We show from experiments and simulations on vibration-activated granular matter that self-propelled polar rods in an elastic medium on a substrate turn and move towards each other. We account for this effective attraction through a…

软凝聚态物质 · 物理学 2022-06-08 Rahul Kumar Gupta , Raushan Kant , Harsh Soni , A. K. Sood , Sriram Ramaswamy