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Currently, biological signaling is envisaged as a combination of activation and movement, triggered by local molecular interactions and molecular diffusion, respectively. However, we here suggest, that other fundamental physical mechanisms…

生物物理 · 物理学 2018-05-22 B. Fichtl , I. Silman , M. F. Schneider

Local changes in pH are known to significantly alter the state and activity of proteins and in particular enzymes. pH variations induced by pulses propagating along soft interfaces (e.g. the lipid bilayer) would therefore constitute an…

生物物理 · 物理学 2015-03-18 Bernhard Fichtl , Shamit Shrivastava , Matthias F. Schneider

Electrical signals play the primary role in rapid communication among organs, tissues and cells in biosystems. We have analyzed and discussed three phenomena of electrical communication in biosystems, including direction-changing movement…

生物物理 · 物理学 2017-08-11 Jingjing Xu , Fan Yang , Danhong Han , Shengyong Xu

Biological membranes by virtue of their elastic properties should be capable of propagating localized perturbations analogous to sound waves. However, the existence and the possible role of such waves in communication in biology remains…

生物物理 · 物理学 2014-08-12 Shamit Shrivastava , Matthias F. Schneider

The existence and propagation of acoustic pressure pulses on lipid monolayers at the air/water-interfaces are directly observed by simple mechanical detection. The pulses are excited by small amounts of solvents added to the monolayer from…

生物物理 · 物理学 2012-11-20 J. Griesbauer , S. Boessinger , A. Wixforth , M. F. Schneider

In biological cells and novel diagnostic devices biochemical receptors need to be sensitive to extremely small concentration changes of signaling molecules. The accuracy of such molecular signaling is ultimately limited by the counting…

亚细胞过程 · 定量生物学 2023-04-06 Aljaz Godec , Ralf Metzler

This paper presents a method for shaping the transmit pulse of a molecular signal such that the diffusion channel's response is a sharp pulse. The impulse response of a diffusion channel is typically characterised as having an infinitely…

新兴技术 · 计算机科学 2016-11-17 Siyi Wang , Weisi Guo , Mark D. McDonnell

Molecular communication is a biologically-inspired method of communication with attractive properties for microscale and nanoscale devices. In molecular communication, messages are transmitted by releasing a pattern of molecules at a…

信息论 · 计算机科学 2008-12-09 Andrew W. Eckford

Intercellular signaling has an important role in organism development, but not all communication occurs using the same mechanism. Here, we analyze the energy efficiency of intercellular signaling by two canonical mechanisms: diffusion of…

定量方法 · 定量生物学 2022-11-30 Hyunjoong Kim , Yoichiro Mori , Joshua B. Plotkin

Mounting evidence shows that oscillatory activity is widespread in cell signaling. Here we review some of this recent evidence, focusing on both the molecular mechanisms that potentially underlie such dynamical behavior, and the potential…

细胞行为 · 定量生物学 2022-04-15 Pablo Casani-Galdon , Jordi Garcia-Ojalvo

In this paper we show that living cells can multiplex biochemical signals, i.e. transmit multiple signals through the same signaling pathway simultaneously, and yet respond to them very specifically. We demonstrate how two binary input…

分子网络 · 定量生物学 2012-06-01 Wiet de Ronde , Filipe Tostevin , Pieter Rein ten Wolde

Information transmission in biological signaling circuits has often been described using the metaphor of a noise filter. Cellular systems need accurate, real-time data about their environmental conditions, but the biochemical reaction…

分子网络 · 定量生物学 2019-02-27 David Hathcock , James Sheehy , Casey Weisenberger , Efe Ilker , Michael Hinczewski

In recent years it is increasingly being recognized that biochemical signals are not necessarily constant in time and that the temporal dynamics of a signal can be the information carrier. Moreover, it is now well established that…

分子网络 · 定量生物学 2015-06-17 Wiet de Ronde , Pieter Rein ten Wolde

Statistical properties of environments experienced by biological signaling systems in the real world change, which necessitate adaptive responses to achieve high fidelity information transmission. One form of such adaptive response is gain…

分子网络 · 定量生物学 2012-05-01 Ilya Nemenman

Arterial blood pressure is a key vital sign for the health of the human body. As such, accurate and reproducible measurement techniques are necessary for successful diagnosis. Blood pressure measurement is an example of molecular…

信息论 · 计算机科学 2014-10-22 Malcolm Egan , Adam Noel , Yansha Deng , Maged Elkashlan , Trung Q. Duong

Signal transduction, or signal-processing capability, is a fundamental property of nature that manifests universally across systems of different scales -- from quantum behaviour to the biological. This includes the detection of…

信号处理 · 电气工程与系统科学 2023-09-12 Dorje C. Brody , Anthony J. Trewavas

In this paper, we propose adding enzymes to the propagation environment of a diffusive molecular communication system as a strategy for mitigating intersymbol interference. The enzymes form reaction intermediates with information molecules…

信息论 · 计算机科学 2014-10-17 Adam Noel , Karen C. Cheung , Robert Schober

Models that invoke nonlinear wavefront propagation in a chemically excitable medium are rife in the biological literature. Indeed, the idea that wavefront propagation can serve as a signaling mechanism has often been invoked to explain…

软凝聚态物质 · 物理学 2014-11-20 Timon Idema , Andrea J. Liu

Molecular signalling in living cells occurs at low copy numbers and is thereby inherently limited by the noise imposed by thermal diffusion. The precision at which biochemical receptors can count signalling molecules is intimately related…

统计力学 · 物理学 2016-09-26 Aljaz Godec , Ralf Metzler

The action potential propagating in a nerve fibre generates accompanying mechanical and thermal effects. The whole signal is therefore an ensemble which includes primary and secondary components. The primary components of a signal are the…

生物物理 · 物理学 2018-12-14 Jüri Engelbrecht , Kert Tamm , Tanel Peets
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