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A novel mechanism of reaction-induced active molecular motion, not involving any kind of self-propulsion, is proposed and analyzed. Because of the momentum exchange with the surrounding solvent, conformational transitions in…

软凝聚态物质 · 物理学 2023-04-19 Hiroyuki Kitahata , Alexander S. Mikhailov

We discuss the validity of recent results in [Phys. Rev. Lett. 125, 125501 (2020)] on an universal relation between the heat capacity and dispersions of collective excitations in liquids.

无序系统与神经网络 · 物理学 2021-06-16 T. Bryk , N. Jakse , I. Mryglod , G. Ruocco , J. -F. Wax

Several enzymes exhibit enhanced diffusion in the presence of a substrate. One explanation of this enhancement arises from fluctuating dimer models, which suggest that enzymes have a higher diffusion constant when interacting with…

软凝聚态物质 · 物理学 2024-05-14 Amit Singh Vishen , Jacques Prost , Madan Rao

A solvable model is proposed and analyzed to reveal the mechanism underlying the diffusion enhancement recently reported for a model of molecular motors and predicted to be observed in the biological rotary motor $\rm F_1$-ATPase. It turns…

统计力学 · 物理学 2018-12-12 Ryo Kanada , Ryota Shinagawa , Kazuo Sasaki

Evidence for nonthermal activity in clusters of galaxies is well established from radio observations of synchrotron emission by relativistic electrons, and new windows (in EUV and Hard X-ray ranges) have provided more powerful tools for its…

天体物理学 · 物理学 2007-05-23 Vahe' Petrosian

The relation between relaxation and diffusion is investigated in a Hamiltonian system of globally coupled rotators. Diffusion is anomalous if and only if the system is going towards equilibrium. The anomaly in diffusion is not anomalous…

混沌动力学 · 物理学 2007-05-23 Yamaguchi Y. Yoshiyuki

A relationship between the preexponent of the rate constant and the distribution over activation barrier energies for enzymatic/protein reactions is revealed. We consider an enzyme solution as an ensemble of individual molecules with…

生物大分子 · 定量生物学 2012-11-16 A. E. Sitnitsky

The swelling kinetics of charged polymer gels reflect the complex competition among elastic, mixing, and ionic contributions. Here, we used dynamic light scattering to investigate the collective diffusion coefficient of model gels, whose…

软凝聚态物质 · 物理学 2024-02-01 Shoei Sano , Takashi Yasuda , Takeshi Fujiyabu , Naoyuki Sakumichi , Takamasa Sakai

Diffusion is often accompanied by a reaction or sorption which can induce temperature inhomogeneities. Monte Carlo simulations of Lennard-Jones atoms in zeolite NaCaA are reported with a hot zone presumed to be created by a reaction. Our…

统计力学 · 物理学 2019-05-15 A. V. Anil Kumar , S. Yashonath , G. Ananthakrishna

We show, that the theoretical expression for the dispersion of collective excitations reported in [Phys. Rev. B {\bf 103}, 099901 (2021)], at variance with what was claimed in the paper, does not account for the energy fluctuations and does…

无序系统与神经网络 · 物理学 2021-04-05 T. Bryk , I. Mryglod , G. Ruocco

In this paper, we propose adding enzymes to the propagation environment of a diffusive molecular communication system as a strategy for mitigating intersymbol interference. The enzymes form reaction intermediates with information molecules…

信息论 · 计算机科学 2014-10-17 Adam Noel , Karen C. Cheung , Robert Schober

Overdamped motion of Brownian particles in tilted piecewise linear periodic potentials is considered. Explicit algebraic expressions for the diffusion coefficient, current, and coherence level of Brownian transport are derived. Their…

软凝聚态物质 · 物理学 2009-11-10 Els Heinsalu , Risto Tammelo , Teet Ord

Physics of self-propelled objects at the nanoscale is a rapidly developing research field where recent experiments focused on motion of individual catalytic enzymes. Contrary to the experimental advancements, theoretical understanding of…

软凝聚态物质 · 物理学 2022-08-29 Artem Ryabov , Mykola Tasinkevych

The effect of conformational fluctuations of modular macromolecules, such as enzymes, on their diffusion properties is addressed using a simple generic model of an asymmetric dumbbell made of two hydrodynamically coupled subunits. It is…

软凝聚态物质 · 物理学 2017-11-22 Pierre Illien , Tunrayo Adeleke-Larodo , Ramin Golestanian

The collective diffusion effects in system of a colloidal particles in a liquid crystal has been proposed. In this article described peculiarity of collective diffusion colloidal particles in a liquid crystal, which can be observe…

软凝聚态物质 · 物理学 2017-12-25 B. I. Lev , A. G. Zagorodny

Inspired by problems in biochemical kinetics, we study statistical properties of an overdamped Langevin process whose friction coefficient depends on the state of a similar, unobserved process. Integrating out the latter, we derive the long…

统计力学 · 物理学 2009-08-13 Golan Bel , Ilya Nemenman

Enzymes have been shown to diffuse faster in the presence of their reactants. Recently, we revealed new insights into this process of enhanced diffusion using single-particle tracking (SPT) with total internal reflection fluorescence (TIRF)…

生物物理 · 物理学 2021-01-01 Mengqi Xu , W. Benjamin Rogers , Wylie W. Ahmed , Jennifer L. Ross

The diffusion of a molecular motor in the presence of a constant external force is considered on the basis of a simple theoretical model. The motor is represented by a Brownian particle moving in a series of parabolic potentials placed…

统计力学 · 物理学 2016-06-01 Ryota Shinagawa , Kazuo Sasaki

In an ensemble of laser-driven atoms involving strongly interacting Rydberg states, the excitation probability is usually strongly suppressed. In contrast, here we identify a regime in which the steady-state Rydberg excited fraction is…

原子物理 · 物理学 2015-03-17 Martin Gärttner , Shannon Whitlock , David W. Schönleber , Jörg Evers

The fundamental insight into Brownian motion by Einstein is that all substances exhibit continual fluctuations due to thermal agitation balancing with the frictional resistance. However, even at thermal equilibrium, biological activity can…

软凝聚态物质 · 物理学 2014-02-19 Soya Shinkai , Yuichi Togashi