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In this paper, we present a novel algorithm for the maximum a posteriori decoding (MAPD) of time-homogeneous Hidden Markov Models (HMM), improving the worst-case running time of the classical Viterbi algorithm by a logarithmic factor. In…

机器学习 · 计算机科学 2015-12-14 Massimo Cairo , Gabriele Farina , Romeo Rizzi

In this paper, we introduce the on-line Viterbi algorithm for decoding hidden Markov models (HMMs) in much smaller than linear space. Our analysis on two-state HMMs suggests that the expected maximum memory used to decode sequence of length…

数据结构与算法 · 计算机科学 2010-01-25 Rastislav Šrámek , Broňa Brejová , Tomáš Vinař

The article studies different methods for estimating the Viterbi path in the Bayesian framework. The Viterbi path is an estimate of the underlying state path in hidden Markov models (HMMs), which has a maximum posterior probability (MAP).…

统计计算 · 统计学 2019-05-14 Jüri Lember , Dario Gasbarra , Alexey Koloydenko , Kristi Kuljus

Background: Hidden Markov models (HMM) are powerful machine learning tools successfully applied to problems of computational Molecular Biology. In a predictive task, the HMM is endowed with a decoding algorithm in order to assign the most…

生物大分子 · 定量生物学 2007-05-23 Piero Fariselli , Pier Luigi Martelli , Rita Casadio

In a hidden Markov model, the underlying Markov chain is usually hidden. Often, the maximum likelihood alignment (Viterbi alignment) is used as its estimate. Although having the biggest likelihood, the Viterbi alignment can behave very…

统计方法学 · 统计学 2013-07-31 Kristi Kuljus , Jüri Lember

Hidden Markov models (HMMs) are one of the most widely used statistical methods for analyzing sequence data. However, the reporting of output from HMMs has largely been restricted to the presentation of the most-probable (MAP) hidden state…

统计方法学 · 统计学 2015-05-01 Michalis K. Titsias , Christopher Yau , Christopher C. Holmes

We introduce a quantum Viterbi decoding algorithm for hidden quantum Markov models (HQMMs) motivated by quantum information processing and quantum algorithms. Given a finite sequence of measurement outcomes, the algorithm identifies hidden…

We are given a graph $G$ with $n$ vertices, where a random subset of $k$ vertices has been made into a clique, and the remaining edges are chosen independently with probability $\tfrac12$. This random graph model is denoted…

组合数学 · 数学 2010-10-15 Yael Dekel , Ori Gurel-Gurevich , Yuval Peres

Since the early days of digital communication, Hidden Markov Models (HMMs) have now been routinely used in speech recognition, processing of natural languages, images, and in bioinformatics. An HMM $(X_i,Y_i)_{i\ge 1}$ assumes observations…

统计理论 · 数学 2009-02-06 J. Lember , A. Koloydenko

We present a generalization of the Viterbi algorithm for identifying the path with minimal (resp. maximal) weight in a n-tape weighted finite-state machine (n-WFSM), that accepts a given n-tuple of input strings (s_1,... s_n). It also…

计算与语言 · 计算机科学 2009-08-03 André Kempe

Reducing the running time of graph algorithms is vital for tackling real-world problems such as shortest paths and matching in large-scale graphs, where path information plays a crucial role. To address this critical challenge, this paper…

数据结构与算法 · 计算机科学 2026-04-14 Akshar Chavan , Sanaz Rabinia , Daniel Grosu , Marco Brocanelli

Hidden Markov models are traditionally decoded by the Viterbi algorithm which finds the highest probability state path in the model. In recent years, several limitations of the Viterbi decoding have been demonstrated, and new algorithms…

数据结构与算法 · 计算机科学 2013-08-06 Michal Nánási , Tomáš Vinař , Broňa Brejová

We consider a problem of localizing a path-signal that evolves over time on a graph. A path-signal can be viewed as the trajectory of a moving agent on a graph in several consecutive time points. Combining dynamic programming and graph…

信号处理 · 电气工程与系统科学 2018-11-14 Yaoqing Yang , Siheng Chen , Mohammad Ali Maddah-Ali , Pulkit Grover , Soummya Kar , Jelena Kovačević

An algorithm used to extract HMM parameters is revisited. Most parts of the extraction process are taken from implemented Hidden Markov Toolkit (HTK) program under name HInit. The algorithm itself shows a few variations compared to another…

声音 · 计算机科学 2019-08-09 Zulkarnaen Hatala , Victor Puturuhu

Lane determination and lane sequence determination are important components for many Connected and Automated Vehicle (CAV) applications. Lane determination has been solved using Hidden Markov Model (HMM) among other methods. The existing…

机器人学 · 计算机科学 2025-05-13 Mike Stas , Wang Hu , Jay A. Farrell

We consider a bivariate, possibly non-homogeneous, finite-state Markov chain $(X,U)=\{(X_t,U_t)\}_{t=1}^n$. We are interested in the marginal process $X$, which typically is not a Markov chain. The goal is to find a realization (path)…

统计计算 · 统计学 2025-07-28 Oskar Soop , Jüri Lember

Background: Hidden Markov models are widely employed by numerous bioinformatics programs used today. Applications range widely from comparative gene prediction to time-series analyses of micro-array data. The parameters of the underlying…

定量方法 · 定量生物学 2012-10-18 Tin Yin Lam , Irmtraud M. Meyer

The maximum clique problem is a well known NP-Hard problem with applications in data mining, network analysis, informatics, and many other areas. Although there exist several algorithms with acceptable runtimes for certain classes of…

数据结构与算法 · 计算机科学 2012-11-15 Bharath Pattabiraman , Md. Mostofa Ali Patwary , Assefaw H. Gebremedhin , Wei-keng Liao , Alok Choudhary

Many different metrics exist for evaluating parsing results, including Viterbi, Crossing Brackets Rate, Zero Crossing Brackets Rate, and several others. However, most parsing algorithms, including the Viterbi algorithm, attempt to optimize…

cmp-lg · 计算机科学 2008-02-03 Joshua Goodman

The maximum clique problem is a well known NP-Hard problem with applications in data mining, network analysis, information retrieval and many other areas related to the World Wide Web. There exist several algorithms for the problem with…

数据结构与算法 · 计算机科学 2014-12-01 Bharath Pattabiraman , Md. Mostofa Ali Patwary , Assefaw H. Gebremedhin , Wei-keng Liao , Alok Choudhary
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