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In cryo-electron microscopy (EM), molecular structures are determined from large numbers of projection images of individual particles. To harness the full power of this single-molecule information, we use the Bayesian inference of EM…

生物大分子 · 定量生物学 2018-01-17 Pilar Cossio , David Rohr , Fabio Baruffa , Markus Rampp , Volker Lindenstruth , Gerhard Hummer

Cryogenic electron microscopy (cryo-EM) provides images from different copies of the same biomolecule in arbitrary orientations. Here, we present an end-to-end unsupervised approach that learns individual particle orientations from cryo-EM…

图像与视频处理 · 电气工程与系统科学 2021-07-08 Youssef S. G. Nashed , Frederic Poitevin , Harshit Gupta , Geoffrey Woollard , Michael Kagan , Chuck Yoon , Daniel Ratner

Deep learning-based image matching methods play a crucial role in computer vision, yet they often suffer from substantial computational demands. To tackle this challenge, we present HCPM, an efficient and detector-free local…

计算机视觉与模式识别 · 计算机科学 2024-03-20 Ying Chen , Yong Liu , Kai Wu , Qiang Nie , Shang Xu , Huifang Ma , Bing Wang , Chengjie Wang

A deep learning scheme is proposed to solve the electromagnetic (EM) scattering problems where the profile of the dielectric scatterer of interest is incomplete. As a compensation, a limited amount of scattering data is provided, which is…

计算工程、金融与科学 · 计算机科学 2025-05-06 Ji-Yuan Wang , Xin-Yue Lou , Liang Zhang , Yun-Chuan Wang , Xiao-Min Pan

Machine learning is attracting surging interest across nearly all scientific areas by enabling the analysis of large datasets and the extraction of scientific information from incomplete data. Data-driven science is rapidly growing,…

应用物理 · 物理学 2025-03-17 Sung Yun Lee , Do Hyung Cho , Chulho Jung , Daeho Sung , Daewoong Nam , Sangsoo Kim , Changyong Song

Particle filtering is a numerical Bayesian technique that has great potential for solving sequential estimation problems involving non-linear and non-Gaussian models. Since the estimation accuracy achieved by particle filters improves as…

统计计算 · 统计学 2017-11-22 Jeyarajan Thiyagalingam , Lykourgos Kekempanos , Simon Maskell

Scanning transmission electron microscopy (STEM) is an extremely versatile method for studying materials on the atomic scale. Many STEM experiments are supported or validated with electron scattering simulations. However, using the…

Cryo-EM is a transformational paradigm in molecular biology where computational methods are used to infer 3D molecular structure at atomic resolution from extremely noisy 2D electron microscope images. At the forefront of research is how to…

定量方法 · 定量生物学 2025-06-12 Shayan Shekarforoush , David B. Lindell , Marcus A. Brubaker , David J. Fleet

In this paper, we demonstrate a computationally efficient new approach based on deep learning (DL) techniques for analysis, design, and optimization of electromagnetic (EM) nanostructures. We use the strong correlation among features of a…

机器学习 · 计算机科学 2020-02-13 Yashar Kiarashinejad , Sajjad Abdollahramezani , Ali Adibi

Accurate localization of proteins from fluorescence microscopy images is challenging due to the inter-class similarities and intra-class disparities introducing grave concerns in addressing multi-class classification problems. Conventional…

计算机视觉与模式识别 · 计算机科学 2021-10-11 Muhammad Tahir , Saeed Anwar , Ajmal Mian , Abdul Wahab Muzaffar

The so-called matrix-element method (MEM) has long been used successfully as a classification tool in particle physics searches. In the presence of invisible final state particles, the traditional MEM typically assigns probabilities to an…

高能物理 - 唯象学 · 物理学 2019-08-26 Stefan von Buddenbrock , Olivier Mattelaer , Michael Spannowsky

There has been rapid progress recently on the application of deep networks to the solution of partial differential equations, collectively labelled as Physics Informed Neural Networks (PINNs). In this paper, we develop Physics Informed…

机器学习 · 计算机科学 2019-07-09 Vikas Dwivedi , Balaji Srinivasan

Single-particle cryo-electron microscopy (cryo-EM) has recently joined X-ray crystallography and NMR spectroscopy as a high-resolution structural method for biological macromolecules. Cryo-EM was selected by Nature Methods as Method of the…

计算物理 · 物理学 2018-03-20 Amit Singer

The detection of cracks is a crucial task in monitoring structural health and ensuring structural safety. The manual process of crack detection is time-consuming and subjective to the inspectors. Several researchers have tried tackling this…

计算机视觉与模式识别 · 计算机科学 2022-08-30 Shreyas Kulkarni , Shreyas Singh , Dhananjay Balakrishnan , Siddharth Sharma , Saipraneeth Devunuri , Sai Chowdeswara Rao Korlapati

Discovering the 3D atomic structure of molecules such as proteins and viruses is a fundamental research problem in biology and medicine. Electron Cryomicroscopy (Cryo-EM) is a promising vision-based technique for structure estimation which…

计算机视觉与模式识别 · 计算机科学 2016-11-18 Marcus A. Brubaker , Ali Punjani , David J. Fleet

We present an ultra-fast, precise, parameter-free method, which we term Deep-STORM, for obtaining super-resolution images from stochastically-blinking emitters, such as fluorescent molecules used for localization microscopy. Deep-STORM uses…

光学 · 物理学 2018-05-03 Elias Nehme , Lucien E. Weiss , Tomer Michaeli , Yoav Shechtman

Deep learning has revolutionized many industries by enabling models to automatically learn complex patterns from raw data, reducing dependence on manual feature engineering. However, deep learning algorithms are sensitive to input data, and…

机器学习 · 计算机科学 2025-07-21 Mert Sehri , Zehui Hua , Francisco de Assis Boldt , Patrick Dumond

Deep learning has become an extremely effective tool for image classification and image restoration problems. Here, we apply deep learning to microscopy, and demonstrate how neural networks can exploit the chromatic dependence of the…

光学 · 物理学 2018-07-05 Eran Hershko* , Lucien E. Weiss* , Tomer Michaeli , Yoav Shechtman

One significant drawback of a spectroscopic ellipsometry (SE) technique is its time-consuming and often complicated analysis procedure necessary to assess the optical functions of thin-film and bulk samples. Here, to solve this inherent…

Nuclear magnetic resonance (NMR) spectroscopy is one of the leading techniques for protein studies. The method features a number of properties, allowing to explain macromolecular interactions mechanistically and resolve structures with…

定量方法 · 定量生物学 2018-08-03 Piotr Klukowski , Adam Gonczarek