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This technical note introduces parametric dynamic causal modelling, a method for inferring slow changes in biophysical parameters that control fluctuations of fast neuronal states. The application domain we have in mind is inferring slow…

定量方法 · 定量生物学 2020-08-27 Amirhossein Jafarian , Peter Zeidman , Rob. C Wykes , Matthew Walker , Karl J. Friston

Neuron labeling is an approach to visualize the behaviour and respond of a certain neuron to a certain pattern that activates the neuron. Neuron labeling extract information about the features captured by certain neurons in a deep neural…

Modeling brain dynamics to better understand and control complex behaviors underlying various cognitive brain functions are of interests to engineers, mathematicians, and physicists from the last several decades. With a motivation of…

神经元与认知 · 定量生物学 2019-08-21 Benjamin Plaster , Gautam Kumar

We present a statistical framework that jointly models brain shape and functional connectivity, which are two complex aspects of the brain that have been classically studied independently. We adopt a Riemannian modeling approach to account…

统计方法学 · 统计学 2024-04-26 Eardi Lila , John A. D. Aston

Traditional models of category learning in psychology focus on representation at the category level as opposed to the stimulus level, even though the two are likely to interact. The stimulus representations employed in such models are…

计算机视觉与模式识别 · 计算机科学 2020-07-20 Pulkit Singh , Joshua C. Peterson , Ruairidh M. Battleday , Thomas L. Griffiths

We present a methodology that explores how sentence structure is reflected in neural representations of machine translation systems. We demonstrate our model-agnostic approach with the Transformer English-German translation model. We…

计算与语言 · 计算机科学 2022-11-04 Gal Patel , Leshem Choshen , Omri Abend

Neuroscience research has made immense progress over the last decade, but our understanding of the brain remains fragmented and piecemeal: the dream of probing an arbitrary brain region and automatically reading out the information encoded…

Causal reasoning is often challenging with spatial data, particularly when handling high-dimensional inputs. To address this, we propose a neural network (NN) based framework integrated with an approximate Gaussian process to manage spatial…

机器学习 · 计算机科学 2024-12-06 Ziyang Jiang , Zach Calhoun , Yiling Liu , Lei Duan , David Carlson

We introduce bio-inspired artificial neural networks consisting of neurons that are additionally characterized by spatial positions. To simulate properties of biological systems we add the costs penalizing long connections and the proximity…

神经与进化计算 · 计算机科学 2019-10-08 Maciej Wołczyk , Jacek Tabor , Marek Śmieja , Szymon Maszke

Understanding of human visual perception has historically inspired the design of computer vision architectures. As an example, perception occurs at different scales both spatially and temporally, suggesting that the extraction of salient…

计算机视觉与模式识别 · 计算机科学 2023-11-20 Girish Narayanswamy , Yujia Liu , Yuzhe Yang , Chengqian Ma , Xin Liu , Daniel McDuff , Shwetak Patel

Effective treatments that prevent or reduce drug relapse vulnerability should be developed to relieve the high burden of drug addiction to society. This will only be possible by enhancing the understanding of the molecular mechanisms…

生物物理 · 物理学 2022-06-29 Mayte Bonilla-Quintana , Padmini Rangamani

Biological image processing is performed by complex neural networks composed of thousands of neurons interconnected via thousands of synapses, some of which are excitatory and others inhibitory. Spiking neural models are distinguished from…

神经与进化计算 · 计算机科学 2019-09-19 Pedro Machado , Georgina Cosma , T. M McGinnity

Restricted Boltzmann Machines are simple yet powerful neural networks. They can be used for learning structure in data, and are used as a building block of more complex neural architectures. At the same time, their simplicity makes them…

无序系统与神经网络 · 物理学 2025-01-09 Giovanni di Sarra , Barbara Bravi , Yasser Roudi

Identifying what aspects of brain activity are responsible for conscious perception remains one of the most challenging problems in science. While progress has been made through psychophysical studies employing EEG and fMRI, research would…

神经元与认知 · 定量生物学 2025-07-14 Daniel K. Freeman , Brian Odegaard , Seung-Schik Yoo , Matthias Michel

Neurons can display highly variable dynamics. While such variability presumably supports the wide range of behaviors generated by the organism, their gene expressions are relatively stable in the adult brain. This suggests that neuronal…

神经元与认知 · 定量生物学 2023-11-07 Lu Mi , Trung Le , Tianxing He , Eli Shlizerman , Uygar Sümbül

Deep neural network architectures often consist of repetitive structural elements. We introduce an approach that reveals these patterns and can be broadly applied to the study of deep learning. Similarly to how a power strip helps untangle…

统计力学 · 物理学 2025-07-03 Donghee Lee , Hye-Sung Lee , Jaeok Yi

Due to its causal semantics, Bayesian networks (BN) have been widely employed to discover the underlying data relationship in exploratory studies, such as brain research. Despite its success in modeling the probability distribution of…

计算机视觉与模式识别 · 计算机科学 2015-06-24 Luping Zhou , Lei Wang , Lingqiao Liu , Philip Ogunbona , Dinggang Shen

We propose stochastic, non-parametric activation functions that are fully learnable and individual to each neuron. Complexity and the risk of overfitting are controlled by placing a Gaussian process prior over these functions. The result is…

机器学习 · 统计学 2017-12-01 Sebastian Urban , Marcus Basalla , Patrick van der Smagt

Data generated in perturbation experiments link perturbations to the changes they elicit and therefore contain information relevant to numerous biological discovery tasks -- from understanding the relationships between biological entities…

Neuroscientists today can measure activity from more neurons than ever before, and are facing the challenge of connecting these brain-wide neural recordings to computation and behavior. Here, we first describe emerging tools and…

神经元与认知 · 定量生物学 2022-01-10 Anne E. Urai , Brent Doiron , Andrew M. Leifer , Anne K. Churchland