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A variety of agent-based models has been proposed to account for the emergence of coordinated collective behavior of animal groups from simple interaction rules. A common, simplifying assumption of such collective movement models, is the…

In 1972, Robert May triggered a worldwide research program studying ecological communities using random matrix theory. Yet, it remains unclear if and when we can treat real communities as random ecosystems. Here, we draw on recent progress…

种群与进化 · 定量生物学 2021-09-28 Wenping Cui , Robert Marsland , Pankaj Mehta

The size structure of fish-communities is an emergent high-level property of marine food webs responsive to changes in structure and function. To measure this food web property using data arising from routine fisheries surveys, a simple…

种群与进化 · 定量生物学 2017-09-11 Christopher P. Lynam , Axel G. Rossberg

Increasing evidence of the effects of changing climate on physical ocean conditions and long-term changes in fish populations adds to the need to understand the effects of stochastic forcing on marine populations. Cohort resonance is of…

种群与进化 · 定量生物学 2010-08-11 Lee Worden , Louis W. Botsford , Alan Hastings , Matthew D. Holland

The networks of predator-prey interactions in ecological systems are remarkably complex, but nevertheless surprisingly stable in terms of long term persistence of the system as a whole. In order to understand the mechanism driving the…

种群与进化 · 定量生物学 2015-06-05 Korinna T. Allhoff , Daniel Ritterskamp , Björn C. Rall , Barbara Drossel , Christian Guill

In the last decades, the notion that cities are in a state of equilibrium with a centralised organisation has given place to the viewpoint of cities in disequilibrium and organised from bottom to up. In this perspective, cities are evolving…

计算机与社会 · 计算机科学 2018-11-05 Marcos Oliveira , Eraldo Ribeiro , Carmelo Bastos-Filho , Ronaldo Menezes

Collective behaviour in living systems is observed across many scales, from bacteria to insects, to fish shoals. Zebrafish have emerged as a model system amenable to laboratory study. Here we report a three-dimensional study of the…

统计力学 · 物理学 2024-05-16 Yushi Yang , Francesco Turci , Erika Kague , Chrissy L. Hammond , John Russo , C. Patrick Royall

The transient behavior of an ecosystem with N random interacting species in the presence of a multiplicative noise is analyzed. The multiplicative noise mimics the interaction with the environment. We investigate different asymptotic…

统计力学 · 物理学 2009-11-10 B. Spagnolo , D. Valenti , A. Fiasconaro

Microbial ecosystems are commonly modeled by fixed interactions between species in steady exponential growth states. However, microbes often modify their environments so strongly that they are forced out of the exponential state into…

种群与进化 · 定量生物学 2024-01-08 Avaneesh V. Narla , Terence Hwa , Arvind Murugan

We study the non-equilibrium phase transition between survival and extinction of spatially extended biological populations using an agent-based model. We especially focus on the effects of global temporal fluctuations of the environmental…

统计力学 · 物理学 2017-07-04 Hatem Barghathi , Skye Tackkett , Thomas Vojta

We introduce the Webworld model, which links together the ecological modelling of food web structure with the evolutionary modelling of speciation and extinction events. The model describes dynamics of ecological communities on an…

adap-org · 物理学 2007-05-23 Guido Caldarelli , Paul G. Higgs , Alan J. McKane

Collective decision-making arises from individual agents integrating their own personal observations with information obtained from social partners. In many biological systems that exhibit collective decision-making, the process by which…

定量方法 · 定量生物学 2026-04-28 Ling-Wei Kong , Naomi Ehrich Leonard , Andrew M. Hein

Predicting species persistence within ecological communities is a fundamental challenge for both empirical and theoretical ecology. Existing methods span from mechanistic models, whose parameters are difficult to estimate from data, to…

Many organisms live in populations structured by space and by class, exhibit plastic responses to their social partners, and are subject to non-additive ecological and fitness effects. Social evolution theory has long recognized that all of…

种群与进化 · 定量生物学 2014-04-24 Jeremy Van Cleve , Erol Akçay

We investigate the selective forces that promote the emergence of modularity in nature. We demonstrate the spontaneous emergence of modularity in a population of individuals that evolve in a changing environment. We show that the level of…

分子网络 · 定量生物学 2009-11-13 Jiankui He , Jun Sun , Michael W. Deem

Population genetics struggles to model extinction; standard models track the relative rather than absolute fitness of genotypes, while the exceptions describe only the short-term transition from imminent doom to evolutionary rescue. But…

种群与进化 · 定量生物学 2017-02-20 Jason Bertram , Kevin Gomez , Joanna Masel

For past several decades, research efforts in population modelling has proven its efficacy in understanding the basic information about residential and commercial areas, as well as for the purposes of planning, development and improvement…

社会与信息网络 · 计算机科学 2016-06-29 Gautam S. Thakur , Kevin A. Sparks , Robert N. Stewart , Marie L. Urban , Budhendra L. Bhaduri

Collective phenomena, whereby agent-agent interactions determine spatial patterns, are ubiquitous in the animal kingdom. On the other hand, movement and space use are also greatly influenced by the interactions between animals and their…

定量方法 · 定量生物学 2016-03-21 Jonathan R. Potts , Karl Mokross , Mark A. Lewis

We used a metacommunity of 49 discrete communities of aquatic invertebrates to analyze the dynamical relationship between community and metacommunity species distributions as a test of the neutral theory of biodiversity and biogeography. At…

种群与进化 · 定量生物学 2007-05-23 Michael M. Fuller , Tamara N. Romanuk , Jurek Kolasa

The focus of this paper is a key component of a methodology for understanding, interpolating, and predicting fish movement patterns based on spatiotemporal data recorded by spatially static acoustic receivers. Unlike GPS trackers which emit…

统计计算 · 统计学 2026-02-20 Mahshid Ahmadian , Edward L. Boone , Grace S. Chiu