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The theory of multidimensional persistent homology was initially developed in the discrete setting, and involved the study of simplicial complexes filtered through an ordering of the simplices. Later, stability properties of…

计算几何 · 计算机科学 2013-03-28 Niccolò Cavazza , Marc Ethier , Patrizio Frosini , Tomasz Kaczynski , Claudia Landi

Today's probabilistic language generators fall short when it comes to producing coherent and fluent text despite the fact that the underlying models perform well under standard metrics, e.g., perplexity. This discrepancy has puzzled the…

计算与语言 · 计算机科学 2025-06-06 Clara Meister , Tiago Pimentel , Gian Wiher , Ryan Cotterell

With the development of large language models (LLMs), particularly with the introduction of the long reasoning chain technique, the reasoning ability of LLMs in complex problem-solving has been significantly enhanced. While acknowledging…

We explore a family of nested recurrence relations with arbitrary levels of nesting, which have an interpretation in terms of fixed points of morphisms over a countably infinite alphabet. Recurrences in this family are related to a number…

组合数学 · 数学 2013-07-02 Marcel Celaya , Frank Ruskey

We develop a theory of persistent homology for directed simplicial complexes which detects persistent directed cycles in odd dimensions. We relate directed persistent homology to classical persistent homology, prove some stability results,…

代数拓扑 · 数学 2023-06-06 David Méndez , Rubén J. Sánchez-García

Using a set of $\Lambda$CDM simulations of cosmic structure formation, we study the evolving connectivity and changing topological structure of the cosmic web using state-of-the-art tools of multiscale topological data analysis (TDA). We…

Biologists have long sought a way to explain how statistical properties of genetic sequences emerged and are maintained through evolution. On the one hand, non-random structures at different scales indicate a complex genome organisation. On…

定量方法 · 定量生物学 2018-11-01 Giampaolo Cristadoro , Mirko Degli Esposti , Eduardo G. Altmann

Transformer-based language models are effective but complex, and understanding their inner workings and reasoning mechanisms is a significant challenge. Previous research has primarily explored how these models handle simple tasks like name…

计算与语言 · 计算机科学 2025-05-20 Zeyuan Allen-Zhu , Yuanzhi Li

While vector-based language representations from pretrained language models have set a new standard for many NLP tasks, there is not yet a complete accounting of their inner workings. In particular, it is not entirely clear what aspects of…

计算与语言 · 计算机科学 2021-04-16 Matteo Alleman , Jonathan Mamou , Miguel A Del Rio , Hanlin Tang , Yoon Kim , SueYeon Chung

Topological data analysis can provide insight on the structure of weighted graphs and digraphs. However, some properties underlying a given (di)graph are hardly mappable to simplicial complexes. We introduce \textit{steady} and…

计算几何 · 计算机科学 2022-08-30 Mattia G. Bergomi , Massimo Ferri , Antonella Tavaglione

We continue the research on the generative capacity of contextual grammars where contexts are adjoined around whole words (externally) or around subwords (internally) which belong to special regular selection languages. All languages…

形式语言与自动机理论 · 计算机科学 2022-09-01 Jürgen Dassow , Bianca Truthe

Persistent homology, a powerful mathematical tool for data analysis, summarizes the shape of data through tracking topological features across changes in different scales. Classical algorithms for persistent homology are often constrained…

量子物理 · 物理学 2024-02-28 Bernardo Ameneyro , George Siopsis , Vasileios Maroulas

Persistent homology analysis provides means to capture the connectivity structure of data sets in various dimensions. On the mathematical level, by defining a metric between the objects that persistence attaches to data sets, we can…

机器学习 · 计算机科学 2019-06-12 Henri Riihimäki , José Licón-Saláiz

Persistence has proved to be a valuable tool to analyze real world data robustly. Several approaches to persistence have been attempted over time, some topological in flavor, based on the vector space-valued homology functor, other…

代数拓扑 · 数学 2019-05-23 Mattia G. Bergomi , Pietro Vertechi

Language similarities can be caused by genetic relatedness, areal contact, universality, or chance. Colexification, i.e. a type of similarity where a single lexical form is used to convey multiple meanings, is underexplored. In our work, we…

计算与语言 · 计算机科学 2024-01-08 Yiyi Chen , Johannes Bjerva

Network generators that capture the Internet's large-scale topology are crucial for the development of efficient routing protocols and modeling Internet traffic. Our ability to design realistic generators is limited by the incomplete…

统计力学 · 物理学 2009-11-07 Soon-Hyung Yook , Hawoong Jeong , Albert-Laszlo Barabasi

Orthologous genes, which arise through speciation, play a key role in comparative genomics and functional inference. In particular, graph-based methods allow for the inference of orthology estimates without prior knowledge of the underlying…

种群与进化 · 定量生物学 2025-02-14 Anna Lindeberg , Guillaume E. Scholz , Nicolas Wieseke , Marc Hellmuth

Hypergraph data appear and are hidden in many places in the modern age. They are data structure that can be used to model many real data examples since their structures contain information about higher order relations among data points. One…

社会与信息网络 · 计算机科学 2020-10-02 Dong Quan Ngoc Nguyen , Lin Xing , Lizhen Lin

Scientific data has been growing in both size and complexity across the modern physical, engineering, life and social sciences. Spatial structure, for example, is a hallmark of many of the most important real-world complex systems, but its…

Persistent Topology studies topological features of shapes by analyzing the lower level sets of suitable functions, called filtering functions, and encoding the arising information in a parameterized version of the Betti numbers, i.e. the…

代数拓扑 · 数学 2010-05-05 Andrea Cerri , Patrizio Frosini